Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq23646 147 3e-29
seq29541 131 2e-24
seq12011 95.1 1e-13
>seq23646
Length=6130
Score = 147 bits (162), Expect = 3e-29
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
||||| || ||| ||| | || | ||||| |||||| | ||| | | ||| ||
Sbjct 438 GCCAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATAGTC 379
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
|||||||| |||| || ||||| ||||||| | ||||||| |||| ||||||
Sbjct 378 GACCGCTTGTTGTAGTGGGCGAGACGTGACGCCTCGGCGGCGATGCGCTCGAAGATGTCG 319
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
|| || ||||||||||||| ||||||| |||| ||||||| || |||||| ||||||
Sbjct 318 TTCACGAACGAGTTCATGATGGACATCGCCTTGCTGGAGATACCGGTGTCGGGATGCACC 259
Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548
|||||||||||||||||||||
Sbjct 258 TGCTTGAGCACCTTGTAGATG 238
>seq29541
Length=172442
Score = 131 bits (144), Expect = 2e-24
Identities = 108/132 (82%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1254417 TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1254476
||| |||| ||||||||| ||||||| | ||||||| |||| |||||||| || |||
Sbjct 143682 TTCTAGTGGGCCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAAC 143741
Query 1254477 GAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1254536
|||||||| | |||||| | |||| ||||||| || |||||||||||| || || |||
Sbjct 143742 GAGTTCATTATCGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGC 143801
Query 1254537 ACCTTGTAGATG 1254548
||||||||||||
Sbjct 143802 ACCTTGTAGATG 143813
>seq12011
Length=6290
Score = 95.1 bits (104), Expect = 1e-13
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1254427 CCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1254486
|||||||| ||||||| | ||||||| |||| |||||||| || ||||||||||| |
Sbjct 4387 CCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAACGAGTTCATTA 4446
Query 1254487 CCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538
||||| | |||| ||||||| || |||||||||||| || || || ||
Sbjct 4447 TAGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGAAC 4498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6102211297850533
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |