Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23646 147 3e-29 seq29541 131 2e-24 seq12011 95.1 1e-13 >seq23646 Length=6130 Score = 147 bits (162), Expect = 3e-29 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | || | ||||| |||||| | ||| | | ||| || Sbjct 438 GCCAGCTCACCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATAGTC 379 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||||| |||| || ||||| ||||||| | ||||||| |||| |||||| Sbjct 378 GACCGCTTGTTGTAGTGGGCGAGACGTGACGCCTCGGCGGCGATGCGCTCGAAGATGTCG 319 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| ||||||| |||| ||||||| || |||||| |||||| Sbjct 318 TTCACGAACGAGTTCATGATGGACATCGCCTTGCTGGAGATACCGGTGTCGGGATGCACC 259 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||||||||||||||||||| Sbjct 258 TGCTTGAGCACCTTGTAGATG 238 >seq29541 Length=172442 Score = 131 bits (144), Expect = 2e-24 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 1254417 TTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAAC 1254476 ||| |||| ||||||||| ||||||| | ||||||| |||| |||||||| || ||| Sbjct 143682 TTCTAGTGGGCCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAAC 143741 Query 1254477 GAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGC 1254536 |||||||| | |||||| | |||| ||||||| || |||||||||||| || || ||| Sbjct 143742 GAGTTCATTATCGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGC 143801 Query 1254537 ACCTTGTAGATG 1254548 |||||||||||| Sbjct 143802 ACCTTGTAGATG 143813 >seq12011 Length=6290 Score = 95.1 bits (104), Expect = 1e-13 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1254427 CCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1254486 |||||||| ||||||| | ||||||| |||| |||||||| || ||||||||||| | Sbjct 4387 CCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAACGAGTTCATTA 4446 Query 1254487 CCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||| | |||| ||||||| || |||||||||||| || || || || Sbjct 4447 TAGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGAAC 4498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102211297850533