Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5628 206 2e-48 seq8007 127 2e-24 seq42682 100 2e-16 >seq5628 Length=471597 Score = 206 bits (228), Expect = 2e-48 Identities = 138/154 (90%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 |||| || ||||| ||||||||||||| || |||||||||||||||||||||||||||| Sbjct 422313 TGGCAGGTCGTCCCAGCGCCTTGGCGACCTCCGGCATGTTGACGATGACAGTCTTGATGC 422254 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 ||||||| || || || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 422253 CGTTGCCTTTGCCCTCCACCTTGGCGCAGATGCGCGGCATCTTGTAGCGGTAGAACGCGT 422194 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 |||||||||||||||| || || | || |||||| Sbjct 422193 CCGCCACATTGCGGTTCACATTTAAAGACCCCAT 422160 Score = 141 bits (156), Expect = 8e-29 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 || || ||||||||||| | ||| | ||||||||| |||||||||||||||||| ||| Sbjct 422888 CCGTCTAGCAGGTCCTGCAGCTTGGCCGAGTCGTGGCTGCCGTTGACGATGAATCGCTCG 422829 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || ||||| |||| ||||||||||||||| |||||||||||||||||||| ||||| Sbjct 422828 TTCTTGTAGTCGAACTGCGTTTGCGCGCCTAGCTCGCACCCGAAGTACTTGGTCGG 422773 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 || |||||||| ||||||||||| ||||||||||| || ||| | ||| |||||| Sbjct 423175 GCGGGCGGGTTCTTCAGTATGAACGTGTTGAGCTTGTGGCTGAACTCGAGCTGGCCGTGG 423116 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || ||||| || ||||||||| |||| |||| |||||| || ||||| Sbjct 423115 TAGCCGCACGCGCGGCAGCCCTGCGAGATGGTGTTGCGCCGCTGGGACACTATCAGCTCC 423056 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 ||||| |||||||| || || || |||| ||| |||||||||||||| Sbjct 423055 GTCTCAGGGTTGTCGCACTCGGGGCACAGCACGAACTTGCGGATGAA 423009 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/193 (72%), Gaps = 15/193 (8%) Strand=Plus/Minus Query 33589 ACTTTGGGCAGCAGCGCCTGGTCCAAAACGCAcagcgcggtgagcgcg---------gcc 33639 ||||| ||||||||||| ||| | | || || |||||||||||| || Sbjct 426984 ACTTTCGGCAGCAGCGCAGGGTTCTGAGCGGCAAGAGCGGTGAGCGCGTGCAGAGCAGCG 426925 Query 33640 cgctgcgcgcgcagatcgccgcgcgtaaactgcagcagcagcgcgcggtacttgcgcACG 33699 ||| |||| || ||||| ||||| | ||||||| ||| |||||| | ||||| Sbjct 426924 CGCGGCGCACGAGGATCGAGGCGCGCCAGACGCAGCAGTAGCACGCGGTGCCGCCGCACA 426865 Query 33700 TCCCCGGCGA---ACGCCGCCGGCCTCACCAGCACCTCGAACAGCACCAGCGGCGCCTTC 33756 ||| | || | |||| |||| | |||||||||||||||| ||| ||| ||||||| Sbjct 426864 TCCGCCGCCAGGGACGC-GCCG--CGCACCAGCACCTCGAACGCCACTAGCAGCGCCTTG 426808 Query 33757 GACTTCACCTCCA 33769 |||||||| |||| Sbjct 426807 GACTTCACTTCCA 426795 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 33432 GGCCTGCTGCAGCCAGTCCAGGAAGGGCTGCGCGCGGCGCCGCACGTCCGCCATCTCCTC 33491 |||||||||||||||||| | ||||||||||||||| | | | |||||| | || Sbjct 428101 GGCCTGCTGCAGCCAGTCTATGAAGGGCTGCGCGCGCTTCAGTATGTCCGCTACTATTTC 428042 Query 33492 GCGGCTTAGCG-CTTTGCGGGACGGCTTGTAAAACCACTCCACGATCGCTTTCTTTTCCA 33550 || || |||| ||||| ||||| ||| |||||| | ||||| |||| |||| Sbjct 428041 GC-GCGAAGCGTACTTGCGCGACGGTTTGGCCGCCCACTCGAGGATCGTCTTCTCCTCCA 427983 Query 33551 CCACGTTCAAGTCGTACAGCAGCTTGAAC 33579 | | || | ||||||||||||||| |||| Sbjct 427982 CTATGTCCGAGTCGTACAGCAGCTGGAAC 427954 >seq8007 Length=263333 Score = 127 bits (140), Expect = 2e-24 Identities = 188/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 103646 CCCGTACACCCCGAGTATGCAATAGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCG 103705 ||||||||| |||||| || | ||||| || | || ||| | | ||||| Sbjct 12181 CCCGTACACAAGGAGTATTCATCTGTCGCTGCCCGGCTTAAAACGTTTGCAGACTGGCCT 12122 Query 103706 CGCGGTTTGAAGCAACATCCCGA-GATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAA 103764 | || || |||| | || || ||| || ||||||||||| || || || || ||||| Sbjct 12121 AGAAGTATGCGGCAAAAACCTGAAGAT-CTGGCCGAAGCTGGCTTTTTCTATACAGGCAA 12063 Query 103765 AAGCGACAAAGTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGA 103824 |||||||| ||||||||| || ||| |||| || |||| ||||||| | || || Sbjct 12062 TGGCGACAAAACCAAATGCTTCTATTGCGACGGTGGCTTGAAAGATTGGGAAAACGACGA 12003 Query 103825 CGACCCGTGGCAACAACACGCGCTTTGGTTCGGACGCTGCGCATACGTGCTACTTGTCAA 103884 || || ||| |||| ||||| | ||||||| || || |||||||| | ||||||||| Sbjct 12002 CGTACCATGGGAACAGCACGCCCGTTGGTTCAATCGATGTGCATACGTCCAACTTGTCAA 11943 Query 103885 AGGCCACGATTATGTACAAAAGGT 103908 || ||||| |||||||| || Sbjct 11942 GGGTAGAGATTACGTACAAAAAGT 11919 >seq42682 Length=462070 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||||| || ||||||||||| ||| | ||| || ||| | Sbjct 303908 ATGCAGATCTTTGTCAAAACTTTGACAGGCAAAACCATCACCTTGGAAGTAGAACCTTCC 303967 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| || ||| || || |||||| | || || ||| Sbjct 303968 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 304027 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || |||||||| |||| |||||| | | || |||||| Sbjct 304028 CAGCGTCTCATATTTGCTGGCAAGCAGCTGGAAGATGGAAGAACACTATCTGACTACAAC 304087 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || |||||||| |||| Sbjct 304088 ATCCAGAAGGAATCTACTCTGCA 304110 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| ||||| | || || ||||| ||||| | ||| || ||| | Sbjct 302996 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTAGAAGTTGAACCTTCC 303055 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | |||||| || || || |||||||| | || || ||| Sbjct 303056 GATACAATTGAGAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATCCCTCCTGACCAA 303115 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| ||||||||||| || |||| ||||| | | ||||||||| Sbjct 303116 CAGCGTCTTATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACCCTCTCTGATTACAAC 303175 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| | || ||||| || | || ||||| || Sbjct 303176 ATCCAGAAAGAATCTACTCTTCATCTGGTGCTACGTCTCCGAGGAGG 303222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| | || ||||||||||||||| | || || || Sbjct 301856 ATGCAGATCTTTGTCAAAACTCTGACAGGCAAAACCATTACCTTAGAGGTTGAACCATCT 301915 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| |||||||||||| | || || ||| Sbjct 301916 GACACAATTGAGAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAA 301975 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||| || |||| ||||| | | ||||| ||| Sbjct 301976 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACCCTTTCAGATTATAAC 302035 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| | ||| |||| | | || ||||| || Sbjct 302036 ATCCAGAAAGAATCTACTCTTCACCTGGTACTGCGTCTTCGAGGAGG 302082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| | || || ||||| || || | || ||| || Sbjct 302540 ATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCA 302599 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | |||||| || ||| ||||| |||||| | ||| || ||| Sbjct 302600 GATACTATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAA 302659 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||| || |||| ||||| | | || |||||| Sbjct 302660 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAAC 302719 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| || | || | ||||||||||| || || || Sbjct 302720 ATCCAGAAGGAATCAACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 302766 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| | |||||||||||||||||| | ||| || ||| | Sbjct 302312 ATGCAGATTTTTGTCAAAACTCTGACCGGCAAAACCATTACCTTAGAAGTAGAACCTTCC 302371 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| || ||| || || |||||| | || || ||| Sbjct 302372 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 302431 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || |||||||| |||| || || | | ||||| ||| Sbjct 302432 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGGACCCTTTCCGATTATAAC 302491 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || || ||||| || |||| Sbjct 302492 ATCCAGAAGGAATCCACCCTGCA 302514 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| | || || ||||| || || | || ||| || Sbjct 303680 ATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCA 303739 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || || ||| ||||| |||||| | ||| || ||| Sbjct 303740 GATACTATTGAAAATGTGAAGGCTAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAA 303799 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||||| ||| || || |||||||| |||| ||||| | | ||||| ||| Sbjct 303800 CAGCGTCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACCCTTTCTGATTATAAC 303859 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || ||||| |||| | || ||| | || || || || Sbjct 303860 ATTCAGAAGGAGTCTACTCTGCATCTCGTCTTACGTCTACGTGGAGG 303906 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTGA 110331 |||||||| ||||||||||| | || || ||||| || || | || || |||| | Sbjct 304136 ATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTTGAGGCCTCA 304195 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || || || ||| || || |||||| | ||| |||||| Sbjct 304196 -GATACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCCCCGGATCA 304254 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | || |||| ||| || |||||||| || |||| ||||| | | ||||| || Sbjct 304255 ACAGCGTCTAATTTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTCTCTGATTATAA 304314 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 |||||| || || ||||| | ||| |||| || | || || || || || Sbjct 304315 CATTCAGAAGGAGTCTACTCTTCACTTGGTCCTACGTCTTCGTGGAGGCAA 304365 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | || || ||||| || || | || ||| || Sbjct 303224 ATGCAGATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCA 303283 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| || || |||||| | ||| || ||| Sbjct 303284 GATACTATTGAAAATGTGAAAGCTAAAATTCAGGATAAGGAAGGCATCCCCCCAGACCAA 303343 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | ||||| | ||| || || ||||| || |||| ||||| | | || |||||| Sbjct 303344 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAAC 303403 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || |||||||| | || | ||||||||||| || || || Sbjct 303404 ATCCAGAAGGAATCTACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 303450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412539463036157