Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq23646 185 1e-40
seq29541 111 2e-18
seq41271 107 3e-17
seq12011 89.7 8e-12
seq2500 86.0 1e-10
>seq23646
Length=6130
Score = 185 bits (204), Expect = 1e-40
Identities = 188/243 (77%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||||||||| |||||||||| | ||||| || ||| |||
Sbjct 482 TGTACTTGGTGACCGCCTTGGTACCCTCGCTGACGGCGTGCTTTGCCAGCTCACCGGGCA 423
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
| || | ||||| |||||| | ||| | || ||| || |||||||| |||
Sbjct 422 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATAGTCGACCGCTTGTTGTAGT 363
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| | | | | ||||||| | ||||||| |||| |||||||| || ||||||||
Sbjct 362 GGGCGAGACGTGAC--GCCTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTT 305
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||| ||||||| ||| ||||||| || |||||| ||||||||||||||||||||
Sbjct 304 CATGATGGACATCGCCTTGCTGGAGATACCGGTGTCGGGATGCACCTGCTTGAGCACCTT 245
Query 1485708 GTA 1485710
|||
Sbjct 244 GTA 242
>seq29541
Length=172442
Score = 111 bits (122), Expect = 2e-18
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
||||| ||| ||||||| | ||||||| |||| |||||||| || |||||||||||
Sbjct 143691 GCCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAACGAGTTCATT 143750
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710
|||||||| | ||| ||||||| || |||||||||||| || || |||||||||||
Sbjct 143751 ATCGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGCACCTTGTA 143809
>seq41271
Length=142513
Score = 107 bits (118), Expect = 3e-17
Identities = 172/245 (70%), Gaps = 4/245 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||| || || ||||| |||||||||| | ||||| || || | |
Sbjct 56826 TGTACTTGGTGACGGCTTTTGTCCCCTCGCTGACGGCGTGCTTCGCCAGCTCCCCAGGAA 56767
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587
| ||| ||||| | ||||| | ||| || | ||| || |||||||| |||
Sbjct 56766 GCAGCAGCCGCACAGAAGTCTGCACCTCTCGCGACGTGATAGTCGACCGCTTGTTGTAGT 56707
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| ||| || || ||||| | | || || |||| ||||| || || ||||||||
Sbjct 56706 GGGCG--AGACGAGAAGCCTCCGCCGCAATACGCTCGAAGATGTCATTCACGAACGAGTT 56649
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
||| || ||||| | || || ||||| ||| || ||||| ||||| ||||| ||
Sbjct 56648 CATAATAGACATGGCCTTAGACGAAATGCCGGTGTCTGGATGCACTTGCTTCAGCACTTT 56589
Query 1485708 GTAAA 1485712
|||||
Sbjct 56588 GTAAA 56584
>seq12011
Length=6290
Score = 89.7 bits (98), Expect = 8e-12
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652
|||| ||| ||||||| | ||||||| |||| |||||||| || ||||||||||| |
Sbjct 4387 CCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAACGAGTTCATTA 4446
Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
| ||||| | ||| ||||||| || |||||||||||| || || || ||
Sbjct 4447 TAGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGAAC 4498
>seq2500
Length=990298
Score = 86.0 bits (94), Expect = 1e-10
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843
|||||||||||||||| ||| ||||| | || ||||| | |||||||||||||||||
Sbjct 483760 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 483701
Query 1812844 CTCACCCGAGGTATATC 1812860
|||||||| || |||||
Sbjct 483700 CTCACCCGGGGCATATC 483684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7909858713986511
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |