Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23646 185 1e-40 seq29541 111 2e-18 seq41271 107 3e-17 seq12011 89.7 8e-12 seq2500 86.0 1e-10 >seq23646 Length=6130 Score = 185 bits (204), Expect = 1e-40 Identities = 188/243 (77%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| |||||||||| | ||||| || ||| ||| Sbjct 482 TGTACTTGGTGACCGCCTTGGTACCCTCGCTGACGGCGTGCTTTGCCAGCTCACCGGGCA 423 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | ||| | || ||| || |||||||| ||| Sbjct 422 GCAGGAGCCTCACGGAGGTCTGCACCTCCCTGGACGTGATAGTCGACCGCTTGTTGTAGT 363 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | | | | ||||||| | ||||||| |||| |||||||| || |||||||| Sbjct 362 GGGCGAGACGTGAC--GCCTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTT 305 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||||| ||| ||||||| || |||||| |||||||||||||||||||| Sbjct 304 CATGATGGACATCGCCTTGCTGGAGATACCGGTGTCGGGATGCACCTGCTTGAGCACCTT 245 Query 1485708 GTA 1485710 ||| Sbjct 244 GTA 242 >seq29541 Length=172442 Score = 111 bits (122), Expect = 2e-18 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||| ||| ||||||| | ||||||| |||| |||||||| || ||||||||||| Sbjct 143691 GCCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAACGAGTTCATT 143750 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||||||| | ||| ||||||| || |||||||||||| || || ||||||||||| Sbjct 143751 ATCGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGCACCTTGTA 143809 >seq41271 Length=142513 Score = 107 bits (118), Expect = 3e-17 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||| || || ||||| |||||||||| | ||||| || || | | Sbjct 56826 TGTACTTGGTGACGGCTTTTGTCCCCTCGCTGACGGCGTGCTTCGCCAGCTCCCCAGGAA 56767 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| ||||| | ||||| | ||| || | ||| || |||||||| ||| Sbjct 56766 GCAGCAGCCGCACAGAAGTCTGCACCTCTCGCGACGTGATAGTCGACCGCTTGTTGTAGT 56707 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||| | | || || |||| ||||| || || |||||||| Sbjct 56706 GGGCG--AGACGAGAAGCCTCCGCCGCAATACGCTCGAAGATGTCATTCACGAACGAGTT 56649 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||||| | || || ||||| ||| || ||||| ||||| ||||| || Sbjct 56648 CATAATAGACATGGCCTTAGACGAAATGCCGGTGTCTGGATGCACTTGCTTCAGCACTTT 56589 Query 1485708 GTAAA 1485712 ||||| Sbjct 56588 GTAAA 56584 >seq12011 Length=6290 Score = 89.7 bits (98), Expect = 8e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 |||| ||| ||||||| | ||||||| |||| |||||||| || ||||||||||| | Sbjct 4387 CCAGACGGGAAGCCTCGGCGGCGATGCGCTCGAATATGTCGTTAACGAACGAGTTCATTA 4446 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 | ||||| | ||| ||||||| || |||||||||||| || || || || Sbjct 4447 TAGACATGGCCTTGCTGGAGATACCGGTGTCGGGGTGCACTTGTTTCAGAAC 4498 >seq2500 Length=990298 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 483760 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 483701 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 483700 CTCACCCGGGGCATATC 483684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909858713986511