Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq49719 224 8e-54 seq8007 127 2e-24 seq42682 100 2e-16 seq5822 96.9 3e-15 seq41782 89.7 4e-13 seq17913 84.2 2e-11 >seq49719 Length=92225 Score = 224 bits (248), Expect = 8e-54 Identities = 585/885 (66%), Gaps = 19/885 (2%) Strand=Plus/Plus Query 29068 TCGCTGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGC 29127 ||| ||| || || || || ||||| || ||| | || || || || || || | | Sbjct 79985 TCGGTGCATACTTCGTCGAGTGGGGAGTCTATCCGAGGAAATTCCCAGTTGATAAGATTC 80044 Query 29128 CGCTGCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGC 29187 | |||||||||| || ||||| ||||||||||||| |||||||| || || || || Sbjct 80045 CAGTGCCCAACCTGTCTCATCTTCTGTACGGTTTCATTCCTATTTGTGGTGGTGATGGTA 80104 Query 29188 TCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGG 29247 |||||||| | || || || || |||| ||| ||||||| ||||||| | Sbjct 80105 TCAACGACAGTTTGAAGGAAATCGATGGAAGCTTTGCCGCGTTGCAACGGTCTTGCAGTG 80164 Query 29248 GCCGTTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAA 29307 | || || ||||| || ||||||| || || ||||| || | || || || || | Sbjct 80165 GTCGCGAGGACTTCAAGGTGTCTATTCATGACCCATGGGCAGCCCTGCAGAAGCCACAGA 80224 Query 29308 AGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCA 29367 |||| ||||| ||||| || || ||||| || ||||| |||||||| ||| | | Sbjct 80225 AGGGTCTGTCTAGTTGGAATGAACCTTACAAGGGTAACTTTGGTCAGCTGATGTCTCTAA 80284 Query 29368 AGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACC 29427 | | ||||| || || | || |||||||| ||| |||| |||||||| || |||| | Sbjct 80285 AACAGGCCAGGCCCGACTTAAAGATTCTGCCTTCCGTCGGTGGCTGGACCTTAGCCGATC 80344 Query 29428 CGTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAAT 29487 |||||| ||| | | || || ||| | | ||||| | || || | ||| | Sbjct 80345 CGTTCTTCTTCTTTGATGATAAGGTTAAAAGAGATCGCTTTGTCGCTTCAGTAAAAGACT 80404 Query 29488 TTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCA 29547 | |||||| |||||||| || ||||| || || || || |||||||| || ||||| | Sbjct 80405 TCCTGCAGACATGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTA 80464 Query 29548 AAGGCGCCAACCCGACACTTGGCAACGGGGAGCGC----GACGCCGACACGTATAACATT 29603 |||| |||||||| ||| | ||| | || | |||| ||| ||| || Sbjct 80465 AAGGTGCCAACCC-TCACCT-----CGGTG-GCCCTAAAGACGGCGAAGTGTACGTCACA 80517 Query 29604 TTACTAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTAC 29663 | | || || | || | |||| || |||| | | || || | | ||| Sbjct 80518 CTGATGAAAGAGCTTCGTGAAATGCTGAACGAACTGGGCGCCGAGACCGGAAGGAAATAC 80577 Query 29664 GAGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCT 29723 ||| ||||| ||| || ||| | ||| |||||||| ||| | | ||| || Sbjct 80578 GAGCTGACATCCGCTATTAGTGCTGGATGGGACAAGATCCAGGTAATCGACTACAACAAG 80637 Query 29724 GCGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCA 29783 ||||| || | | || | || ||||| ||||||||||| || || || || ||||| Sbjct 80638 GCGCAGAACTACATGGACCACATCTTCCTGATGAGCTACGACTTCAAGGGAGCCTGGTCC 80697 Query 29784 AACACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGA-ACT 29842 ||| | | || ||||||| | || ||||| || |||| || || || ||| Sbjct 80698 AACGACACCCTCGGTCACCAAACCCCACTGTACGCTCCAGCGTGGAGGCCCAAGGAGACT 80757 Query 29843 GTACAACACGGACCACGCCGTTAAGT---TGCTCACGAACCAGGGCGTGGACCCGCGCAA 29899 |||| | || || || | | ||||| | ||||| ||| |||| || Sbjct 80758 -TACACATCAGATTTCGGAGTCCAATACCTGCTCGC---TCAGGGAGTGAACCCTAAGAA 80813 Query 29900 AATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT 29944 || ||||| || || ||||||||||| || || ||||| || || Sbjct 80814 GATCATTGTCGGAGTGGCCATGTACGGTCGTGGCTGGACCGGAGT 80858 >seq8007 Length=263333 Score = 127 bits (140), Expect = 2e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 103848 AAACTTTTAAGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCG 103907 |||| ||| || ||||| | ||| || || ||||| || | |||||||||| | Sbjct 12141 AAACGTTTGCAGACTGGCCTAGAAGTATGCGGCAAAAACCTGAAGATCTGGCCGAAGCTG 12082 Query 103908 GATTCTACTACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAA 103967 | || | ||| || ||| | ||||||| || ||||||||||| ||||||||||| | | Sbjct 12081 GCTTTTTCTATACAGGCAATGGCGACAAAACCAAATGCTTCTATTGCGACGGTGGCTTGA 12022 Query 103968 AGGATTGGGAGCACGATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCG 104027 | |||||||| |||| || | || ||| |||| ||||| | || || || || | Sbjct 12021 AAGATTGGGAAAACGACGACGTACCATGGGAACAGCACGCCCGTTGGTTCAATCGATGTG 11962 Query 104028 CATACGTGCTACTTGTCAAGGGCCACGATTATGTACAAAAGGT 104070 ||||||| | |||||||||||| ||||| |||||||| || Sbjct 11961 CATACGTCCAACTTGTCAAGGGTAGAGATTACGTACAAAAAGT 11919 >seq42682 Length=462070 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||||||||| |||||||||||||| ||| | ||| || || | Sbjct 303908 ATGCAGATCTTTGTCAAAACTTTGACAGGCAAAACCATCACCTTGGAAGTAGAACCTTCC 303967 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || ||| || ||| ||||| |||||| | || || || Sbjct 303968 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 304027 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || |||||||| || | | |||| | | ||||||||| Sbjct 304028 CAGCGTCTCATATTTGCTGGCAAGCAGCTGGAAGATGGAAGAACACTATCTGACTACAAC 304087 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || ||||| ||||| |||| Sbjct 304088 ATCCAGAAGGAATCTACTCTGCA 304110 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||||||||| | || || ||||| || || | || ||||| Sbjct 304136 ATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTTGAGGCCTCA 304195 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || || ||| ||||| |||||| | ||| |||||| Sbjct 304196 GATACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCCCCGGATCAA 304255 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||| || |||||||| || || | | ||| | | || || ||| Sbjct 304256 CAGCGTCTAATTTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTCTCTGATTATAAC 304315 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||||||||| | ||| |||| Sbjct 304316 ATTCAGAAGGAGTCTACTCTTCACTTGGT 304344 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| ||||| ||| | || || ||||| |||||| | || |||||| Sbjct 300730 AAGATGCAAATTTTCGTCAAGACTCTCACTGGAAAAACAATTACCTTGGAGGTAGAGGCT 300789 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| | | | || ||| || ||| || || |||||| | ||| || Sbjct 300790 TCAGACACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATCCCCCCAGAC 300849 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || |||||||| || | | ||| | | || || Sbjct 300850 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACTCTATCTGATTAT 300909 Query 107733 AACATTCAAAAGGAGTCTAC 107752 ||||| || ||||||||||| Sbjct 300910 AACATACAGAAGGAGTCTAC 300929 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||||||||| | || || ||||| || || | || |||||| Sbjct 303680 ATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCA 303739 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || || ||| || || |||||| | ||| || || Sbjct 303740 GATACTATTGAAAATGTGAAGGCTAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAA 303799 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | ||||||| ||| || || |||||||| || | | ||| | | || || ||| Sbjct 303800 CAGCGTCTTATTTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACCCTTTCTGATTATAAC 303859 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| ||||||||||| |||| Sbjct 303860 ATTCAGAAGGAGTCTACTCTGCA 303882 >seq5822 Length=633359 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||||||||| |||| ||||| || || ||| |||| ||| ||| Sbjct 414968 AATGCAGATTTTTGTCAAAACCCTAACGGGCAAGACTATCACCCTCGAGGTGGAAGCTTC 415027 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | || ||| |||||| ||||| ||||| | || ||||| Sbjct 415028 CGACACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCA 415087 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | |||| ||| || || ||| |||| |||| | || | | |||||||| Sbjct 415088 GCAACGTTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGTACGCTATCTGACTACAA 415147 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAA 107785 || || || |||||||| || || | || |||||| | || || || || Sbjct 415148 TATCCAGAAAGAGTCTACCTTACATCTTGTATTGAGACTTCGCGGAGGTAA 415198 >seq41782 Length=81921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||||||||| |||| ||||| || || ||| |||| ||| ||| Sbjct 22670 AATGCAGATTTTTGTCAAAACCCTAACGGGCAAGACTATCACCCTCGAGGTGGAAGCTTC 22729 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | || ||| |||||| ||||| ||||| | || ||||| Sbjct 22730 CGACACTATTGAGAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCACCAGATCA 22789 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | |||| ||| || || ||| |||| |||| | || | | |||||||| Sbjct 22790 GCAACGTTTAATTTTTGCTGGCAAGCAGTTGGAAGACGGCCGTACGCTATCTGACTACAA 22849 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG-AGAT 107772 || || || |||||||| || || | || ||| |||| Sbjct 22850 TATCCAGAAAGAGTCTACCTTACATCTTGTATTGTAGAT 22888 >seq17913 Length=240356 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/232 (68%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || ||||| || || ||||||||||| || ||||| ||| | Sbjct 97632 ATGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTCGAAGTTGAGCCCTCT 97691 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || || || ||||||||| | ||| || ||| Sbjct 97692 GACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 97751 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||| ||||||| | || || || ||||| || |||||| ||| | | ||||| Sbjct 97752 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGC----ACACTATCAGACTA 97807 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||||||| |||||||| || | || |||| | | ||| |||| ||| Sbjct 97808 CAACATTCAGAAGGAGTCGACCCTTCATTTGGTACTCCGTTTGAGAGGTGGA 97859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || ||||| || || ||||||||||| || |||| ||| | Sbjct 97176 ATGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACGCTCGAGGTTGAGCCCTCT 97235 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || || || ||||||||| | ||| || ||| Sbjct 97236 GACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 97295 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 ||| ||||||| | || || || ||||| || |||||| ||| | | ||||| Sbjct 97296 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGC----ACACTTTCAGACTA 97351 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||||||||| || | || |||| || | ||| |||| || Sbjct 97352 CAACATCCAAAAGGAGTCGACCCTTCATTTGGTACTGCGTTTGAGAGGTGG 97402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398584883135761