Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq42682 118 2e-21 seq17913 105 1e-17 >seq42682 Length=462070 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || |||||||||||||| | || ||||| | | Sbjct 300734 TGCAAATTTTCGTCAAGACTCTCACTGGAAAAACAATTACCTTGGAGGTAGAGGCTTCAG 300793 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| |||||| ||| || |||||||| || || || || | Sbjct 300794 ACACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATCCCCCCAGACCAGC 300853 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| ||||| || || || | || ||| ||||| || | |||||||| | Sbjct 300854 AGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACTCTATCTGATTATAACA 300913 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 |||| || || || ||| | ||| | || ||||| || | ||||||| Sbjct 300914 TACAGAAGGAGTCTACTCTACATCTTGTCTTACGTCTACGTGGAGGTA 300961 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | ||||| ||||| ||||| | || ||||||| | || Sbjct 303453 TGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTCCG 303512 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || |||||| || ||||||||||| || || || |||| Sbjct 303513 ACACTATTGAGAATGTTAAGGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAAC 303572 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | ||||| ||||| || || || | || ||| ||||| | | |||||||| | Sbjct 303573 AGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACCCTTTCTGATTATAACA 303632 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || ||||| || | |||||||| |||| Sbjct 303633 TCCAGAAGGAATCTACCCTGCATTTAGTTCTACG 303666 Score = 105 bits (116), Expect = 1e-17 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || || ||||| || ||| | || ||||| | | Sbjct 302541 TGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCAG 302600 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||||||| |||||| || || |||||||| || || || |||| Sbjct 302601 ATACTATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCAAC 302660 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| || || || | || ||| ||||| | | || || || | Sbjct 302661 AGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAACA 302720 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || ||||| ||| | |||||||| ||| || | | ||||| Sbjct 302721 TCCAGAAGGAATCAACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 302766 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | ||||| ||||| ||||| | || || |||| | Sbjct 301857 TGCAGATCTTTGTCAAAACTCTGACAGGCAAAACCATTACCTTAGAGGTTGAACCATCTG 301916 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| ||||| || ||||||||||| || || || |||| Sbjct 301917 ACACAATTGAGAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAAC 301976 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | || || ||||| || || || | || ||| ||||| | |||||||||| | Sbjct 301977 AGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACCCTTTCAGATTATAACA 302036 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| ||| | || | ||| | || | ||||||||| Sbjct 302037 TCCAGAAAGAATCTACTCTTCACCTGGTACTGCGTCTTCGAGGAGGTA 302084 >seq17913 Length=240356 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| || || || ||||| || || | || || |||| | Sbjct 96493 TGCAAATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTGGAGGTTGAACCCTCAG 96552 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| |||||| || |||||||||||||| || || || | Sbjct 96553 ACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 96612 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| |||| || |||| || || | Sbjct 96613 AGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGAACACTATCAGACTACAACA 96672 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || ||||| | ||||| ||| | || || ||||| |||| Sbjct 96673 TTCAAAAGGAGTCGACCCTACATTTGGTACTGCGTTTGAGAGGTGGTA 96720 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| || || || ||||| || || | || || |||| | Sbjct 96721 TGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTCGAGGTTGAACCCTCTG 96780 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| || ||||||||||||||||| || || | Sbjct 96781 ATACAATTGAAAATGTCAAAGCAAAAATCCAGGACAAAGAAGGCATTCCACCAGACCAGC 96840 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || | |||| || || | Sbjct 96841 AGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACACTTTCAGACTACAACA 96900 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || ||||| | ||||| ||| | || || ||||| |||| Sbjct 96901 TCCAAAAGGAGTCGACCCTACATTTGGTACTGCGTTTGAGAGGTGGTA 96948 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| || || || ||||| || || | || || || | | Sbjct 97405 TGCAGATTTTCGTAAAAACCTTGACTGGCAAAACTATCACACTCGAGGTTGAGCCCTCTG 97464 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| |||||| || ||||||||||||||||| ||||| | Sbjct 97465 ACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCACCAGATCAGC 97524 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || | |||| || || | Sbjct 97525 AGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACACTTTCAGACTACAACA 97584 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || ||||| | ||||||||| | || || ||||| |||| Sbjct 97585 TCCAAAAGGAGTCGACCCTTCATTTAGTACTGCGTTTGAGAGGTGGTA 97632 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || ||| | || |||||||| ||||| | || || |||| | Sbjct 96265 TGCAGATATTTGTTAAGACACTCACCGGAAAAACCATTACATTAGAGGTGGAACCCTCTG 96324 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || ||||| ||| ||| ||||||||||| || || || | Sbjct 96325 ATACAATTGAAAATGTGAAGGCAAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAGC 96384 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || | |||| || || | Sbjct 96385 AGCGACTTATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACACTTTCAGACTACAACA 96444 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || || || | ||||| ||| | || || ||||| |||| Sbjct 96445 TTCAAAAGGAGTCTACCCTTCATTTGGTACTGCGTTTGAGAGGTGGTA 96492 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| || || || ||||| || || | || || |||| | Sbjct 96949 TGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTCGAGGTTGAACCCTCTG 97008 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| ||||| ||| |||||||||||||| || || || | Sbjct 97009 ACACAATCGAAAATGTCAAAGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAGC 97068 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || | |||| || || | Sbjct 97069 AGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACACTTTCAGACTACAACA 97128 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || ||||| | ||||| ||| | || || ||||| |||| Sbjct 97129 TCCAAAAGGAGTCGACCCTTCATTTGGTACTGCGTTTGAGAGGTGGTA 97176 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| || || || ||||| || || | || || || | | Sbjct 97177 TGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACGCTCGAGGTTGAGCCCTCTG 97236 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| |||||| || |||||||||||||| || || || | Sbjct 97237 ACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 97296 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || | |||| || || | Sbjct 97297 AGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACACTTTCAGACTACAACA 97356 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || ||||| | ||||| ||| | || || ||||| |||| Sbjct 97357 TCCAAAAGGAGTCGACCCTTCATTTGGTACTGCGTTTGAGAGGTGGTA 97404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| || || || ||||| || || | || || || | | Sbjct 97633 TGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTCGAAGTTGAGCCCTCTG 97692 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| |||||| || |||||||||||||| || || || | Sbjct 97693 ACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 97752 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || || || || || || | || ||| | || || |||| || || | Sbjct 97753 AGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACACTATCAGACTACAACA 97812 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || ||||| | ||||| ||| | || || ||||| || Sbjct 97813 TTCAGAAGGAGTCGACCCTTCATTTGGTACTCCGTTTGAGAGGTGG 97858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785576293673080