Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq42682 86.0 1e-11 >seq42682 Length=462070 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/137 (73%), Gaps = 11/137 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTT----------- 81692 |||||| | ||||||||||| |||||||||||||||||||| | |||| Sbjct 300932 AGAGTAGACTCCTTCTGTATGTTATAATCAGATAGAGTTCTTCCATCTTCCAGCTGCTTG 300873 Query 81693 CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | | ||||||| || | || || |||| | || ||||||| |||||||| || ||| Sbjct 300872 CCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGAATTTTAGCT 300813 Query 81753 TTTATATTTTCAATCGT 81769 || | ||||||||| || Sbjct 300812 TTCACATTTTCAATAGT 300796 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCT--------- 81694 |||||| | |||||||| || ||||||||||| |||||||| | |||||| Sbjct 304335 AGAGTAGACTCCTTCTGAATGTTATAATCAGAGAGAGTTCTTCCATCTTCTAGCTGTTTG 304276 Query 81695 --AACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 | |||| ||||| | |||||| | || | || |||||||||||||||| || || Sbjct 304275 CCAGCAAAAATTAGACGCTGTTGATCCGGGGGGATGCCTTCCTTATCTTGAATTTTAGCC 304216 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||| ||||| |||| Sbjct 304215 TTGACATTCTCAATAGTAT 304197 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/138 (72%), Gaps = 11/138 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCT-------- 81694 || |||| |||||||||| || || || |||||||||||||| | |||||| Sbjct 301600 CAAAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGAGTTCTTCCATCTTCTAGCTGTTT 301541 Query 81695 ---AACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 | ||||||| || | ||||| ||||| | || |||||||||| ||||| || || Sbjct 301540 GCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGAATTTTAGC 301481 Query 81752 TTTTATATTTTCAATCGT 81769 ||| | ||| ||||| || Sbjct 301480 TTTAACATTCTCAATAGT 301463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902733088260640