Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq18227 188 2e-42 seq44837 96.9 8e-15 >seq18227 Length=276284 Score = 188 bits (208), Expect = 2e-42 Identities = 513/778 (66%), Gaps = 13/778 (2%) Strand=Plus/Plus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 || || |||||| || | |||||| | ||||| || ||||| | ||||| | || | | Sbjct 240064 CCACAGCACATGCTTATGCGTGTTTCAATTGGAATACATGGGGAGGATATCGATGCAGCT 240123 Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTT 110489 || | |||| || || | | |||| | || |||||| | || || || || Sbjct 240124 ATCAACACTTATAATTTACTGTCTGAAAAATATTTTACTCATGCCAGCCCAACTCTCTTC 240183 Query 110490 AACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGAT 110549 || | ||| | ||||| | || |||||| | ||| || || ||||| Sbjct 240184 TCAGCTGCCACTCCCAAACCTCAATTATCATCATGCTTTTTAATAGCCATGAAAGATGAC 240243 Query 110550 TCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT-CTGG 110608 || || || || |||||| ||||||| || ||| | || || |||| || |||| Sbjct 240244 AGCATAGAGGGAATATATGATACTCTTAAGCAATGTGCCTTGATATC-AAAATCTGCTGG 240302 Query 110609 AGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAA 110668 || ||||| | || || ||| ||| | ||||||| ||| ||| || | | || Sbjct 240303 TGGGATTGGATTGCATGTCCATTGCATTAGAGCAAAAGGCACAACTATTGCTGGAACAAA 240362 Query 110669 GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGT 110728 |||| ||| | ||| || || || ||| | ||||| | || |||| || | |||||| Sbjct 240363 TGGTGTTTCGAATGGTCTAGTACCCATGCTCAGAGTGTATAATAACACAGCTAGATATGT 240422 Query 110729 GAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTC 110785 ||||||| || |||||| || ||||||| | || | ||||| |||||| | Sbjct 240423 CGATCAAGGAGGAAATAAGAGGCCAGGTGCATTTGCAGTATACTTAGAACCGTGGCATGC 240482 Query 110786 AGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACG 110845 ||||||||||| || | || || || ||| || || ||| | || | Sbjct 240483 GGATATATTTGAGTTTCTGGATCTGAAAAAGAATACTGGCAAAGAGGAAGTTCGTGCTAG 240542 Query 110846 TGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 || || |||||||| ||||||| | ||||||||||||||| | ||| || ||||| Sbjct 240543 GGAATTGTTTTATGCCTTGTGGATACCTGATTTATTCATGAAAAGAGTTGAAAGTAATGG 240602 Query 110906 CATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGA 110965 | ||| | ||||| |||||| || || || ||| |||| | ||| |||| Sbjct 240603 AAACTGGAGCTTGATGTGCCCTCATAATTGCCCCGGACTAACTGACACCTGGGGAGAAGA 240662 Query 110966 GTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGC 111025 |||||| | | | || |||||||||||||| || || | | | |||| ||| || Sbjct 240663 GTTTGAGGCCTTATATGAAAAATATGAAAAGGAGAATAATTATGTTAGACAAGTTCGTGC 240722 Query 111026 TCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATAT 111082 ||||| | | ||| ||| || | ||| | ||||| || |||||||| || || || Sbjct 240723 TCAAGTATTATGG---AAAGCTATTATAGAAGCCCAAGTAGAGACTGGAACACCATACAT 240779 Query 111083 TTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || || ||||| || | || | ||| ||||||| ||||||||||| ||||| Sbjct 240780 GTTATACAAAGACTCCT-GCAACAGGAAAAGCAATCAAAAAAATTTAGGAACGATTAA 240836 >seq44837 Length=446624 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| | || | ||| ||| | ||||| || || || | || || || ||| Sbjct 33999 AGACATTTAAGAGATGACGATCTGGTCATATTCAACAGACAGCCCACTCTACACAAGATG 34058 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| | ||| || || ||| | | | ||||| || | ||| ||||| Sbjct 34059 AGTATGATGGGTCACAGAGTAAAGGTGTTACCATGGTCCACATTCCGTATGAATTTAAGT 34118 Query 305426 GCTTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||| || || ||||| |||||||||||||||||||||||| | |||||||| Sbjct 34119 ---TGTACCTCTCCATACAATGCCGATTTTGATGGAGATGAAATGAATTTACATGTACCA 34175 Query 305483 CAATC 305487 ||||| Sbjct 34176 CAATC 34180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185899692564089