Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq49719 352 3e-92 seq18227 172 5e-38 seq42682 100 3e-16 >seq49719 Length=92225 Score = 352 bits (390), Expect = 3e-92 Identities = 876/1310 (67%), Gaps = 25/1310 (2%) Strand=Plus/Plus Query 59827 GATGTTGTCATTGCAGATACCGACGGCTCTCATCTCGCTCCGTTATATTATGAATATCAA 59886 ||| |||| | || || ||||||||| |||||| | ||| | | || || ||| Sbjct 79885 GATATTGTGGTGGCGGACACCGACGGCAGCCATCTCCCACCGCTGGACTAC-AACATCCT 79943 Query 59887 G-AACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGT 59945 | ||| |||| |||| || ||| || || |||||| | | ||||| || || Sbjct 79944 GGAACGGAACAAGCCATTT--AAGCAGACATCCGG-TAAAGTTATCGGTGCATACTTCGT 80000 Query 59946 CGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCACT-CCTAATCTAT 60004 ||| ||||| || ||||| || || || || || ||| || ||| | || || || | Sbjct 80001 CGAGTGGGGAGTCTATCCGAGGAAATTCCCAGTTGATA-AGATTCCAGTGCCCAACCTGT 80059 Query 60005 CGCATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTA 60064 | ||| |||| ||||| || ||||| || || || || || ||||||||||||||| | | Sbjct 80060 CTCATCTTCTGTACGGTTTCATTCCTATTTGTGGTGGTGATGGTATCAACGACAGTTTGA 80119 Query 60065 AAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTA 60124 | || || || || | ||| | || || || || ||||| || ||||| | Sbjct 80120 AGGAAATCGATGGAAGCTTTGCCGCGTTGCAACGGTCTTGCAGTGGTCGCGAGGACTTCA 80179 Query 60125 AAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTT 60184 | || || ||||| || |||||||| ||| | ||||| || || || | | || Sbjct 80180 AGGTGTCTATTCATGACCCATGGGCAGCCCTGCAGAAGCCACAGAAGGGTCTGTCTAGTT 80239 Query 60185 GGAACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCC 60244 |||| ||||| ||||| ||||| || || || | ||| | |||| ||| | ||| Sbjct 80240 GGAATGAACCTTACAAGGGTAACTTTGGTCAGCTGATGTCTCTAAAACAGGCCAGGCCCG 80299 Query 60245 ACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTC 60304 || | || | |||| || |||| || ||||| || ||||||||||||| | |||| Sbjct 80300 ACTTAAAGATTCTGCCTTCCGTCGGTGGCTGGACCTTAGCCGATCCGTTCTTCTTCTTTG 80359 Query 60305 ACGATACGGATAAACGAAAGATTTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGA 60364 | |||| || |||| || | ||||| | ||| || || || || ||||| |||| Sbjct 80360 ATGATAAGGTTAAAAGAGATCGCTTTGTCGCTTCAGTAAAAGACTTCCTGCAGACATGGA 80419 Query 60365 AATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCCCA 60424 | || ||||||||||| || ||||| |||||||| || || || ||||||||||| || Sbjct 80420 AGTTCTTCGACGGTGTTGATATCGATTGGGAGTTCCCTGGTGGTAAAGGTGCCAACCCTC 80479 Query 60425 ACGTAGGCGACGCCGAACGCGATCGCGAAACGTACACCATTCTGTTGAAAGATTTACGCG 60484 || | || | | || || || ||||| |||| || ||| ||||||| | || | Sbjct 80480 ACCTCGGTGGC-CCTAA--AGACGGCGAAGTGTACGTCACACTGATGAAAGAGCTTCGTG 80536 Query 60485 AGGCGCTAGATCG-ATTAACCCTCGA-AACGAATCGAACGTACGAGTTGACCAGCGCAAT 60542 | ||| || || | | | ||| | || | ||| |||||| |||| ||| || Sbjct 80537 AAATGCT-GAACGAACTGGGCGCCGAGACCGGAAGGAA-ATACGAGCTGACATCCGCTAT 80594 Query 60543 TAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACACCGCTGCTCAAGAATATTTAGA 60602 ||| || || ||||| ||| || ||||||||| | || || | || | || Sbjct 80595 TAGTGCTGGATGGGACAAGATCCAGGTAATCGACTACAACAAGGCGCAGAACTACATGGA 80654 Query 60603 TTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTGGTCGAATAACGATCTGGGCTA 60662 || || |||||| ||||| || || ||||||||||| || || || || | Sbjct 80655 CCACATCTTCCTGATGAGCTACGACTTCAAGGGAGCCTGGTCCAACGACACCCTCGGTCA 80714 Query 60663 TCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGAACATTATACTACCGATTTTGC 60722 || || | || |||||||| ||| | || || || ||| || | ||||| | Sbjct 80715 CCAAACCCCACTGTACGCTCCAGCGTGGAGGCCCAAGGAGACTTACACATCAGATTTCGG 80774 Query 60723 CGTTCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaaaaaaTTATTGTCGGCGTGGCCAT 60782 || | || ||| || ||| | ||| || || |||||||| |||||||| Sbjct 80775 AGTCCAATACCTGCTCGCTCAGGGAGTGAACCCTAAGAAGATCATTGTCGGAGTGGCCAT 80834 Query 60783 GTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTGACGATAATAATCCATTTTCCGG 60842 ||||||||| ||||||||||| || | | ||| || || || || |||| Sbjct 80835 GTACGGTCGTGGCTGGACCGGAGTCCAGAACTACACAGAC---AACAACCCCTTCACCGG 80891 Query 60843 AACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACGGAGTCGTCGACTATAGAGAGAT 60902 || | ||||| ||||| ||||| ||| | ||||| ||||| ||||| |||||||| Sbjct 80892 CGTCGCGACCGGACCAGTCAAGGGAACCTGGCAGGACGGTGTCGTGGACTACAGAGAGAT 80951 Query 60903 TTTCAATAATTTCGTCGCCAATAACCCGATGGAAT---ATTACGATTCCGTTGCAAAAGC 60959 | | | | | | | ||| | ||| | |||| ||| ||| || | || Sbjct 80952 TGCCGACGAAATAGCCCAGGGTAA---GTGGGAGTTCCATTATGATAACGTGGCGCAGGC 81008 Query 60960 GGCGTACGTCTTTAATAACTCGACCGGCGAGCTCATCACTTACGACAATCCTCGGTCGGT 61019 | ||||| || | || | ||||| || |||||||||||||| || || | || || Sbjct 81009 TCCATACGTGTTCAGGAAGGCTACCGGGGACCTCATCACTTACGATAACCCAAGATCCGT 81068 Query 61020 TCTGGATAAAGCAAAATATGTATTGGACTATAGCTTGGGTGGTTTGTTCGCTTGGGAGAT 61079 | | || || | ||||| || | || | | ||||| ||| ||||||| |||||||| Sbjct 81069 TATCGAGAAGGGCAAATACGTGAGGAACAACAAGTTGGGAGGTCTGTTCGCGTGGGAGAT 81128 Query 61080 CGACGCCGACAACGGATTACTTC-TAAACGCCATGAACAGCGGTCTCGGC 61128 ||||||||||||||| | || || | ||||||||||||| ||||| ||| Sbjct 81129 CGACGCCGACAACGG-TGACCTCTTGAACGCCATGAACATGGGTCTGGGC 81177 >seq18227 Length=276284 Score = 172 bits (190), Expect = 5e-38 Identities = 486/740 (66%), Gaps = 10/740 (1%) Strand=Plus/Minus Query 136974 ATGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGT 137033 ||| ||||| || |||||| |||| || || | |||||| | | ||| | || || Sbjct 241485 ATGATGATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGT 241426 Query 137034 GAACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTA 137093 || || || || ||||| ||||| || | ||||||||| || | || || ||||| Sbjct 241425 AAATGGTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGG 241366 Query 137094 AGCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCA 137153 ||| | ||| | |||||| || | || || || | || | ||||||||| |||| Sbjct 241365 AGCTAGCAAAAGTGAATTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCA 241306 Query 137154 GTTCCACAGATTGTTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACT 137213 |||||| |||| | | | ||| | ||||||| || | || | | || |||| Sbjct 241305 GTTCCAAAGATCTGTAGGT---GTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACT 241249 Query 137214 TGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTC-GCCAGTTCAATACTCT 137272 || |||||| || | |||| | ||| || | | |||| || |||||| ||| Sbjct 241248 GGCTGGACTTCCTTCGTAAGTACTGTATACACCTT-CTTTTTCTGCTAGTTCACAACTTG 241190 Query 137273 GGACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTT 137332 | || || ||||||||||| |||||| | || | | ||||||| | | |||| | Sbjct 241189 CTTCCAGAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCAATAATATCGCTTTCT 241130 Query 137333 GGCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATAC 137392 || || ||||||| || || | || | || || ||||| |||| ||| |||| Sbjct 241129 CACTTTCATAGGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATAC 241070 Query 137393 CGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGT 137452 | ||||| |||||| | | ||| || | | ||| | ||||| ||||| | | Sbjct 241069 CAATAGGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACAT 241010 Query 137453 CTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAAT 137512 | |||||| | || | ||| | || | |||| | || | || | | | ||||| Sbjct 241009 CAATAATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAAT 240950 Query 137513 CGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATA 137572 | |||| | || ||| |||| |||| | || || || ||||| || |||| Sbjct 240949 TATAAGTTTT---GTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATA 240893 Query 137573 CGGCCGTTTC-TGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGG 137631 | ||| ||| | | | | |||||| |||||||| | || ||||||||| | Sbjct 240892 CAGCCACTTCATCTTCAGAAG-TGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTA 240834 Query 137632 ATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTGATCTTTATATATCATATAC 137691 ||| ||| ||||| ||||||||| ||||| |||| | ||||| |||| ||| || Sbjct 240833 ATCGTTCCTAAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTAT 240774 Query 137692 GGAGTTCCGGTTTCGACTTG 137711 || ||||| || || ||||| Sbjct 240773 GGTGTTCCAGTCTCTACTTG 240754 >seq42682 Length=462070 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| |||||| | || || ||| | || || | || || || || Sbjct 302539 CATGCAAATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTC 302598 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | |||||| |||||| || || || || || || || || || Sbjct 302599 AGATACTATTGAAAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 302658 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | || || | | ||||| || || ||||||| |||| | || ||| ||||| Sbjct 302659 ACAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAA 302718 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || ||||||||||||||||| | | ||||| Sbjct 302719 CATCCAGAAGGAATCAACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 302766 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| ||||| | || || ||| | || || | ||||| ||| | Sbjct 302767 CATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACCTTGGAAGTAGAACCTTC 302826 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| ||||| ||| | || ||| |||||| ||||| || || || || || || || Sbjct 302827 CGACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCA 302886 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | ||||| | | ||||| || || ||||||| |||| | || ||| ||||| Sbjct 302887 ACAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAA 302946 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || ||||||||||||| ||| | | ||||| Sbjct 302947 CATCCAGAAGGAATCTACTCTTCATTTAGTGTTGAGACTCCGTGGAGG 302994 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| | || || | || || || || Sbjct 303224 ATGCAGATCTTTGTCAAAACACTGACTGGTAAAACTATAACTTTGGAGGTAGAGGCTTCA 303283 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| |||||| ||||| || || || || || || || Sbjct 303284 GATACTATTGAAAATGTGAAAGCTAAAATTCAGGATAAGGAAGGCATCCCCCCAGACCAA 303343 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || || | | ||||| || || ||||||| |||| | || ||| ||||| Sbjct 303344 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAAC 303403 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || ||||||||||||||||| | | ||||| Sbjct 303404 ATCCAGAAGGAATCTACTCTTCATTTAGTGTTAAGACTCCGTGGAGG 303450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444760306579680