Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq42682 107 2e-18 seq17913 87.8 1e-12 >seq42682 Length=462070 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| |||| || || || |||||| ||||| |||||| | Sbjct 302768 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACCTTGGAAGTAGAACCTTCC 302827 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || ||| |||||| || || |||||| | || || ||| Sbjct 302828 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 302887 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || | |||||| | |||| | ||| |||||| Sbjct 302888 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAAC 302947 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || |||||||| || |||||||| ||||| | || ||||| Sbjct 302948 ATCCAGAAGGAATCTACTCTTCATTTAGTGTTGAGACTCCGTGGAGG 302994 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| |||| || || || ||||| ||||| |||||| | Sbjct 301400 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTCC 301459 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || ||| |||||| || || |||||| | || || ||| Sbjct 301460 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 301519 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| |||||||| |||||||| | |||| | || |||||| Sbjct 301520 CAGCGTCTCATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTATCTGACTACAAC 301579 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || || |||||||| | |||||||| Sbjct 301580 ATCCAGAAGGAATCTACTTTGCATTTAGT 301608 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| |||| ||||| ||||||||| | || ||||| Sbjct 301856 ATGCAGATCTTTGTCAAAACTCTGACAGGCAAAACCATTACCTTAGAGGTTGAACCATCT 301915 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| ||||||| |||||||||||| | || || ||| Sbjct 301916 GACACAATTGAGAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAA 301975 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | ||| ||||| || | |||||| | ||| | ||||| ||| Sbjct 301976 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACCCTTTCAGATTATAAC 302035 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || || | ||| || | | |||||||| Sbjct 302036 ATCCAGAAAGAATCTACTCTTCACCTGGTACTGCGTCTTCGAGGAGG 302082 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| |||| || || || ||||| ||||| |||||| | Sbjct 303452 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTCC 303511 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || |||||| |||||||||||| | || || ||| Sbjct 303512 GACACTATTGAGAATGTTAAGGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAA 303571 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| ||||| || | |||||| | ||| | ||||| ||| Sbjct 303572 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACCCTTTCTGATTATAAC 303631 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || || |||||||| || |||||||| Sbjct 303632 ATCCAGAAGGAATCTACCCTGCATTTAGT 303660 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||| ||||| |||| ||||| |||||||| | || |||||| Sbjct 302084 ATGCAGATTTTTGTCAAAACTCTGACAGGCAAAACCATTACGCTAGAGGTAGAACCATCT 302143 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||||| ||||| | ||| || ||| Sbjct 302144 GACACAATTGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 302203 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | ||| ||||| || | |||||| | ||| | ||||| ||| Sbjct 302204 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACCCTTTCAGATTATAAC 302263 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || || | ||| || | | |||||||| Sbjct 302264 ATCCAGAAAGAATCTACTCTTCACCTGGTACTGCGTCTTCGAGGAGG 302310 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||||||||| |||| || || || ||||| | ||| ||||| | Sbjct 302996 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTAGAAGTTGAACCTTCC 303055 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| || |||||||| | || ||| ||| Sbjct 303056 GATACAATTGAGAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATCCCTCCTGACCAA 303115 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | ||| || ||||| |||||||| | ||| | ||||||||| Sbjct 303116 CAGCGTCTTATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACCCTCTCTGATTACAAC 303175 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||||||||| || ||| | || | | | |||||||| Sbjct 303176 ATCCAGAAAGAATCTACTCTTCATCTGGTGCTACGTCTCCGAGGAGG 303222 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||||||||| || || || | ||||| || || |||||| |||| ||| | Sbjct 300730 AAGATGCAAATTTTCGTCAAGACTCTCACTGGAAAAACAATTACCTTGGAGGTAGAGGCT 300789 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || || ||| | |||||| |||||| ||||| |||||| | ||| || Sbjct 300790 TCAGACACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATCCCCCCAGAC 300849 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 || || | || || | ||| ||||| || | |||||| | |||| | ||||| Sbjct 300850 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACTCTATCTGATTAT 300909 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||||| || || ||||| |||||| | || || | |||| ||||| Sbjct 300910 AACATACAGAAGGAGTCTACTCTACATCTTGTCTTACGTCTACGTGGAGG 300959 >seq17913 Length=240356 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||| ||||||||||| ||||| || |||| |||||| Sbjct 96492 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTGGAGGTTGAACCCTCA 96551 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| ||||| |||||||||||| | ||| || || Sbjct 96552 GACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 96611 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 || | ||||| | || ||||| || | |||||| | || ||||| || |||| Sbjct 96612 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGAACACTAT--CAGACTACA 96669 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| ||||| || || || |||||||| ||| || | || |||| || Sbjct 96670 ACATTCAAAAGGAGTCGACCCTACATTTGGTACTGCGTTTGAGAGGTGG 96718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402035156213792