Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq42682 107 2e-18
seq17913 87.8 1e-12
>seq42682
Length=462070
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||||||||| |||| || || || |||||| ||||| |||||| |
Sbjct 302768 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACCTTGGAAGTAGAACCTTCC 302827
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| || ||| | || ||| |||||| || || |||||| | || || |||
Sbjct 302828 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 302887
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | || || | ||| ||||| || | |||||| | |||| | ||| ||||||
Sbjct 302888 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACTCTCTCCGACTACAAC 302947
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || || |||||||| || |||||||| ||||| | || |||||
Sbjct 302948 ATCCAGAAGGAATCTACTCTTCATTTAGTGTTGAGACTCCGTGGAGG 302994
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||||||||| |||| || || || ||||| ||||| |||||| |
Sbjct 301400 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTCC 301459
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| || ||| | || ||| |||||| || || |||||| | || || |||
Sbjct 301460 GACACTATTGAGAATGTTAAAGCTAAAATTCAGGATAAGGAAGGCATCCCTCCAGACCAA 301519
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | || || | ||| |||||||| |||||||| | |||| | || ||||||
Sbjct 301520 CAGCGTCTCATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTATCTGACTACAAC 301579
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| || || |||||||| | ||||||||
Sbjct 301580 ATCCAGAAGGAATCTACTTTGCATTTAGT 301608
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||| ||||| |||| ||||| ||||||||| | || |||||
Sbjct 301856 ATGCAGATCTTTGTCAAAACTCTGACAGGCAAAACCATTACCTTAGAGGTTGAACCATCT 301915
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | || ||| ||||||| |||||||||||| | || || |||
Sbjct 301916 GACACAATTGAGAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAA 301975
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | ||||| | ||| ||||| || | |||||| | ||| | ||||| |||
Sbjct 301976 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACCCTTTCAGATTATAAC 302035
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || ||||||||||| || || | ||| || | | ||||||||
Sbjct 302036 ATCCAGAAAGAATCTACTCTTCACCTGGTACTGCGTCTTCGAGGAGG 302082
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||||||||| |||| || || || ||||| ||||| |||||| |
Sbjct 303452 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTGGAAGTAGAACCTTCC 303511
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| || ||| | || || |||||| |||||||||||| | || || |||
Sbjct 303512 GACACTATTGAGAATGTTAAGGCTAAAATTCAGGACAAAGAAGGCATCCCTCCAGACCAA 303571
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | || || | ||| ||||| || | |||||| | ||| | ||||| |||
Sbjct 303572 CAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACCCTTTCTGATTATAAC 303631
Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468
|| || || |||||||| || ||||||||
Sbjct 303632 ATCCAGAAGGAATCTACCCTGCATTTAGT 303660
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| |||||||| ||||| |||| ||||| |||||||| | || ||||||
Sbjct 302084 ATGCAGATTTTTGTCAAAACTCTGACAGGCAAAACCATTACGCTAGAGGTAGAACCATCT 302143
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | || ||| |||||| ||||| ||||| | ||| || |||
Sbjct 302144 GACACAATTGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 302203
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | ||||| | ||| ||||| || | |||||| | ||| | ||||| |||
Sbjct 302204 CAGCGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGAAGAACCCTTTCAGATTATAAC 302263
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || ||||||||||| || || | ||| || | | ||||||||
Sbjct 302264 ATCCAGAAAGAATCTACTCTTCACCTGGTACTGCGTCTTCGAGGAGG 302310
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||||||||| |||| || || || ||||| | ||| ||||| |
Sbjct 302996 ATGCAGATCTTTGTTAAAACCCTGACAGGTAAAACTATTACATTAGAAGTTGAACCTTCC 303055
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | || ||| ||||| || |||||||| | || ||| |||
Sbjct 303056 GATACAATTGAGAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATCCCTCCTGACCAA 303115
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
|| | ||||| | ||| || ||||| |||||||| | ||| | |||||||||
Sbjct 303116 CAGCGTCTTATCTTTGCTGGTAAACAGCTAGAAGATGGAAGAACCCTCTCTGATTACAAC 303175
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|| || ||||||||||| || ||| | || | | | ||||||||
Sbjct 303176 ATCCAGAAAGAATCTACTCTTCATCTGGTGCTACGTCTCCGAGGAGG 303222
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316
|| ||||||||||| || || || | ||||| || || |||||| |||| ||| |
Sbjct 300730 AAGATGCAAATTTTCGTCAAGACTCTCACTGGAAAAACAATTACCTTGGAGGTAGAGGCT 300789
Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376
|| || ||| | |||||| |||||| ||||| |||||| | ||| ||
Sbjct 300790 TCAGACACTATTGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATCCCCCCAGAC 300849
Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436
|| || | || || | ||| ||||| || | |||||| | |||| | |||||
Sbjct 300850 CAGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGAAGAACTCTATCTGATTAT 300909
Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|||||||| || || ||||| |||||| | || || | |||| |||||
Sbjct 300910 AACATACAGAAGGAGTCTACTCTACATCTTGTCTTACGTCTACGTGGAGG 300959
>seq17913
Length=240356
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||||||||| || ||||| ||||||||||| ||||| || |||| ||||||
Sbjct 96492 ATGCAAATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTGGAGGTTGAACCCTCA 96551
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | | | | || ||| ||||| |||||||||||| | ||| || ||
Sbjct 96552 GACACAATCGAAAATGTCAAAGCTAAAATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 96611
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437
|| | ||||| | || ||||| || | |||||| | || ||||| || ||||
Sbjct 96612 CAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGAACACTAT--CAGACTACA 96669
Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
|||| ||||| || || || |||||||| ||| || | || |||| ||
Sbjct 96670 ACATTCAAAAGGAGTCGACCCTACATTTGGTACTGCGTTTGAGAGGTGG 96718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 402035156213792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |