Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23646 145 1e-28 seq29541 102 1e-15 >seq23646 Length=6130 Score = 145 bits (160), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||||||||||||||| ||| |||| | ||| |||| |||| | Sbjct 239 ATCTACAAGGTGCTCAAGCAGGTGCATCCCGACACCGGT-----ATC-TCCAGCAAGGCG 292 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| ||||||| | ||||||| Sbjct 293 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCCGCCGAGGCGTCA 352 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| || ||| | | ||| | |||||| ||||| Sbjct 353 CGTCTCGCCCACTACAACAAGCGGTCGACTATCACGTCCAGGGAGGTGCAGACCTCCGTG 412 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || ||||| | |||||||||| |||||| |||| Sbjct 413 AGGCTCCTGCTGCCCGGTGAGCTGGCAAAGCACGCCGTCAGCGAGGGTACCA 464 >seq29541 Length=172442 Score = 102 bits (112), Expect = 1e-15 Identities = 93/116 (80%), Gaps = 6/116 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| || || ||||||||| |||| | ||| |||| |||| || Sbjct 143812 ATCTACAAGGTGCTGAAACAAGTGCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 143759 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026 |||||||| ||||||||||| || |||||||| |||| ||||||| | ||||||| Sbjct 143758 ATGTCGATAATGAACTCGTTCGTTAACGACATATTCGAGCGCATCGCCGCCGAGGC 143703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172019363579938