Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq23646 145 1e-28
seq29541 102 1e-15
>seq23646
Length=6130
Score = 145 bits (160), Expect = 1e-28
Identities = 172/232 (74%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||||||||||||||||| ||| |||| | ||| |||| |||| |
Sbjct 239 ATCTACAAGGTGCTCAAGCAGGTGCATCCCGACACCGGT-----ATC-TCCAGCAAGGCG 292
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||||| |||||||||||||| || |||||||| |||| ||||||| | |||||||
Sbjct 293 ATGTCCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCCGCCGAGGCGTCA 352
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|| || || | || ||||||||| || ||| | | ||| | |||||| |||||
Sbjct 353 CGTCTCGCCCACTACAACAAGCGGTCGACTATCACGTCCAGGGAGGTGCAGACCTCCGTG 412
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
| || | ||| ||| || ||||| | |||||||||| |||||| ||||
Sbjct 413 AGGCTCCTGCTGCCCGGTGAGCTGGCAAAGCACGCCGTCAGCGAGGGTACCA 464
>seq29541
Length=172442
Score = 102 bits (112), Expect = 1e-15
Identities = 93/116 (80%), Gaps = 6/116 (5%)
Strand=Plus/Minus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||||| || || ||||||||| |||| | ||| |||| |||| ||
Sbjct 143812 ATCTACAAGGTGCTGAAACAAGTGCACCCCGACACCGGT-----ATC-TCCAGCAAGGCC 143759
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGC 725026
|||||||| ||||||||||| || |||||||| |||| ||||||| | |||||||
Sbjct 143758 ATGTCGATAATGAACTCGTTCGTTAACGACATATTCGAGCGCATCGCCGCCGAGGC 143703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7172019363579938
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |