Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq17913 111 1e-19 seq42682 105 6e-18 >seq17913 Length=240356 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||||| || |||||||||||||||||| || | Sbjct 96718 CCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGAATGTTGTAGTCTGAT 96659 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 96658 AGTGTTCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 96599 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || |||||| ||| ||| || || | | || | | ||||| | ||| || Sbjct 96598 ATGCCTTCTTTGTCCTGGAT-TTTAGCTTTGACATTTTCGATTGTGTCTGAGGGTTCAAC 96540 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| ||||| || ||||| ||||| || || || ||||| Sbjct 96539 CTCCAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATTTGCAT 96492 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||| | ||| |||||||||||||||||| || | Sbjct 96490 CCACCTCTCAAACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCTGAA 96431 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 96430 AGTGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 96371 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || ||| ||| ||||| | || | | || || | ||||||| Sbjct 96370 ATGCCTTCCTTATCTTGGATTTTTGCCTTCACATTTTCAATTGTATCAGAGGGTTCCACC 96311 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || ||||| || || | || || |||||||||||||| Sbjct 96310 TCTAATGTAATGGTTTTTCCGGTGAGTGTCTTAACAAATATCTGCAT 96264 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||||| || ||||||||| |||||||| || | Sbjct 96946 CCACCTCTCAAACGCAGTACCAAATGTAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 96887 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 96886 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGTGGA 96827 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || |||||| ||| |||||| || | | || | | || || | ||| || Sbjct 96826 ATGCCTTCTTTGTCCTGGAT-TTTTGCTTTGACATTTTCAATTGTATCAGAGGGTTCAAC 96768 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 96767 CTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96720 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||| | || ||||||||| |||||||| || | Sbjct 97402 CCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97343 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 97342 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97283 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || |||||| ||| ||| || || | | || | | ||||| | || || Sbjct 97282 ATGCCTTCTTTGTCCTGGAT-TTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAAC 97224 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| ||||| || ||||| ||||| || || |||||||| Sbjct 97223 CTCGAGCGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 97176 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || |||||||| | || ||||||||| |||||||| || | Sbjct 97174 CCACCTCTCAAACGCAGTACCAAATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCTGAA 97115 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 97114 AGTGTGCGTCCATCTTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGA 97055 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || || ||||| ||| ||| || || | | || | | ||||| | ||| || Sbjct 97054 ATGCCTTCTTTGTCTTGGAT-TTTCGCTTTGACATTTTCGATTGTGTCAGAGGGTTCAAC 96996 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 96995 CTCGAGTGTGATGGTTTTGCCAGTCAAGGTTTTTACGAAAATCTGCAT 96948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||| ||||||||||| || | | || || | || || Sbjct 97840 ACCAAATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCTGATAGTGTGCGTCCATCTTCA 97781 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || || || || | ||||||||||| | |||| || || |||||| | Sbjct 97780 AGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 97721 Query 35648 ATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 || ||| || || | | || | | ||||| | || || || | ||||| ||||| Sbjct 97720 AT-TTTAGCTTTGACATTTTCGATTGTGTCAGAGGGCTCAACTTCGAGTGTGATGGTTTT 97662 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| ||||| || || |||||||| Sbjct 97661 GCCAGTCAAGGTTTTTACGAAAATCTGCAT 97632 >seq42682 Length=462070 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 || ||||| | ||| ||||| || |||||||| || | | |||| | || ||| Sbjct 304116 ACTAAATGCAGAGTAGATTCCTTCTGGATGTTGTAGTCAGATAGTGTTCTTCCATCTTCC 304057 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || |||||||| | ||||| ||||| | ||| | || ||||| ||| || Sbjct 304056 AGCTGCTTGCCAGCAAATATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCC-TG 303998 Query 35648 ATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| || || | | | | | |||||| | ||| || |||| ||||| ||||| Sbjct 303997 AATTTTAGCTTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAAGGTGATGGTTTT 303938 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||||||| ||||| |||||||| Sbjct 303937 GCCTGTCAAAGTTTTGACAAAGATCTGCAT 303908 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | || || | ||| | ||| |||||| |||||||| ||||| | Sbjct 303906 CCTCCACGTAGACGTAAGACGAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGAA 303847 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || ||||||||||| || ||||| || | ||||| ||||| | || Sbjct 303846 AGGGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAAATAAGACGCTGTTGGTCTGGGGGG 303787 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||| ||| | ||||| | || | | || || | || || Sbjct 303786 ATGCCTTCCTTGTCC-TGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 303728 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || |||||||| |||| ||||| ||||| || ||||| Sbjct 303727 CTCCAAAGTTATAGTTTTACCAGTCAGTGTTTTGACAAAGATTTGCAT 303680 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | || || | ||||| ||| |||||| || ||||| ||||| | Sbjct 301854 CCTCCACGTAGACGTAAGACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGAT 301795 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || ||||||||||| || ||||| || | ||||||||||| | || Sbjct 301794 AGAGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 301735 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||||| ||| ||| | ||||| | || | | || || | || || Sbjct 301734 ATGCCTTCCTTGTCC-TGAATTTTAGCCTTCACATTTTCAATAGTATCTGAAGCCTCTAC 301676 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || |||||||| || | ||||| ||||| || ||||| Sbjct 301675 CTCCAAAGTTATAGTTTTACCAGTTAGTGTTTTGACAAAGATTTGCAT 301628 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 || ||||| | ||| ||||| || ||||| ||||| | | ||||| | || ||| Sbjct 303660 ACTAAATGCAGGGTAGATTCCTTCTGGATGTTATAATCAGAAAGGGTTCTTCCATCTTCC 303601 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| || | ||||| ||||| | ||| | || || |||||| || Sbjct 303600 AGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAGGGATGCCTTCTTTGTCC-TG 303542 Query 35648 ATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| | ||| | | | | | |||||| | ||| || |||| || || ||||| Sbjct 303541 AATTTTAGCCTTAACATTCTCAATAGTGTCGGAAGGTTCTACTTCCAATGTAATAGTTTT 303482 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| |||| ||||| ||||| |||||||| Sbjct 303481 ACCTGTCAGGGTTTTAACAAAGATCTGCAT 303452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||| ||||||| | ||| | | || ||||||||||| || ||||| Sbjct 302502 TCCTTCTGGATGTTATAATCGGAAAGGGTCCTTCCATCTTCCAGCTGCTTGCCAGCAAAG 302443 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | ||||| ||||| | ||| | || ||||| ||| ||| ||| || || | | | Sbjct 302442 ATGAGACGCTGTTGGTCTGGAGGGATGCCTTCCTTATCC-TGAATTTTAGCTTTAACATT 302384 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | ||| || || | || || ||||| || |||| |||||| || Sbjct 302383 CTCAATAGTGTCGGAAGGTTCTACTTCTAAGGTAATGGTTTTGCCGGTCAGAGTTTTGAC 302324 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 302323 AAAAATCTGCAT 302312 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | || || | ||||| ||| |||||| || ||||| ||||| | Sbjct 300959 CCTCCACGTAGACGTAAGACAAGATGTAGAGTAGACTCCTTCTGTATGTTATAATCAGAT 300900 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || ||||||||||| || ||||| || | ||||||||||| | || Sbjct 300899 AGAGTTCTTCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGG 300840 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | || ||||||| | ||| ||| || |||| | || | | ||||| | || || Sbjct 300839 ATGCCTTCCTTGT-CTTGAATTTTAGCTTTCACATTTTCAATAGTGTCTGAAGCCTCTAC 300781 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || ||||| || || | ||| || || || || ||||| Sbjct 300780 CTCCAAGGTAATTGTTTTTCCAGTGAGAGTCTTGACGAAAATTTGCAT 300733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450455228688920