Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq18227 526 3e-144 seq33365 152 7e-32 >seq18227 Length=276284 Score = 526 bits (582), Expect = 3e-144 Identities = 1205/1793 (67%), Gaps = 37/1793 (2%) Strand=Plus/Minus Query 68351 ACTTTA-TTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGT 68409 |||||| |||| || || | ||| |||||||| | || || ||||| || | | Sbjct 241841 ACTTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTT 241782 Query 68410 AGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGT 68469 | ||||||||| || || || || || | |||| | |||||||| || |||||| Sbjct 241781 AAATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGT 241722 Query 68470 TTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCT 68529 || ||| | || || |||| ||| ||||| | |||||||| || || || || ||| Sbjct 241721 TTCCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCT 241662 Query 68530 CCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT--AA 68587 |||||||| || ||||||| ||| | |||| | ||| ||||| | ||| || | Sbjct 241661 CCTCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTAC 241602 Query 68588 AAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCATCGG-AT 68643 |||||| | || || | || | | ||||||| || || ||||| | || Sbjct 241601 AAATCTCTA--ATTTCTTGGGGTATATTTTCAATATTTTGGATAGA---ACCATTGTTAT 241547 Query 68644 --ATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGA 68701 ||||| | |||||| || || || | |||||| | | || ||| | || || | Sbjct 241546 GAATAATGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTA 241487 Query 68702 GATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGG 68761 ||| |||| || | ||||||||| ||||| |||||||| | |||||| || | Sbjct 241486 AATGATGATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATG 241427 Query 68762 TATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAG 68821 || ||||||| | |||||||| ||||| ||||| || || || || ||||||||||| | Sbjct 241426 TAAATGGTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTG 241367 Query 68822 GTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCC 68881 | || | ||| | ||| | ||| ||||| || ||||||||||| || | | ||| Sbjct 241366 GAGCTAGCAAAAGTGAATTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCC 241307 Query 68882 AATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTG 68941 | | ||||||||| | ||| ||||| | |||||||| || || || | ||| | Sbjct 241306 AGTTCCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGG 241247 Query 68942 CATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCT 69001 | ||| | || || || ||||| | ||| ||||||||||||||||| | Sbjct 241246 CTGGACTTCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTT 241187 Query 69002 CTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCTAGA 69060 | | || || || ||||| |||||||| |||| | ||| | || | | |||| | Sbjct 241186 CCAGAGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCA 241128 Query 69061 CTATCGAATGGATAATGTAAA-AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 || || | || | | | | || | ||||| || |||| ||||||||| |||||||| Sbjct 241127 CTTTCATAGGGC-AGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACC 241069 Query 69120 GATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATC 69179 ||||| || |||||| |||| ||| | | ||||||||| | ||||| | || | ||| Sbjct 241068 AATAGGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATC 241009 Query 69180 TATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTT-GAGAAAAT 69238 |||||||| || | |||| | | ||||| | || |||| ||| | |||| | Sbjct 241008 AATAATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATT 240949 Query 69239 CAAA---TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTG 69295 || | ||| || | ||||||||||||| |||| || |||| |||||| || | Sbjct 240948 ATAAGTTTTGTCT-TCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAG 240890 Query 69296 CTACCTCATT---AGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGA 69352 | || |||| |||| | |||| | || || ||||| ||||| || ||||| | Sbjct 240889 CCACTTCATCTTCAGAAGTG---TATTCAACAATTTCAGTACAGAGATTGCTGCATTTAA 240833 Query 69353 TAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACG 69412 | || || | ||||| ||||| || || |||| |||| ||| ||||| | || | | Sbjct 240832 TCGTTCCTAAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATG 240773 Query 69413 GAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTA 69472 | || ||||| || | || | ||| ||||||| |||||| | || |||| | | Sbjct 240772 GTGTTCCAGTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTT 240713 Query 69473 CGGTCTTG--TAACGCTTCTCTTTTTCATATTGTGTATATA--GCCGTTCGAATTCATCT 69528 |||| ||| ||||| |||||||||| | ||||| ||| || || || ||| Sbjct 240712 --GTCTAACATAATTATTCTCCTTTTCATATTTTTCATATAAGGCC--TCAAACTCTTCT 240657 Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588 ||||| ||| | ||| || || | || || |||||||| ||| ||| | Sbjct 240656 CCCCAGGTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCATTA 240597 Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648 | ||||| |||||| |||| ||| || ||||| | || ||| | || || | Sbjct 240596 CTTTCAACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCA 240537 Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708 | | ||| || || || ||||| ||||| ||||| |||||||| | ||||| | |||| Sbjct 240536 CGAACTTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGC 240477 Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768 || ||||||| |||| || | | || || | ||||||||||| ||||| | ||| Sbjct 240476 CACGGTTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATAT 240417 Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828 || || ||||||||||| ||||| ||||| || | | |||||| || |||||||||| Sbjct 240416 CTAGCTGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTT 240357 Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| |||| | ||| |||| | ||| | | | | || || || || || Sbjct 240356 CCAGCAATAGTTGTGCCTTTTGCTCTAATGCAATGGACATGCAATCCAATCCCACCAGCA 240297 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 ||| || || | ||||| | || | || |||||||| ||||||||||| |||||| Sbjct 240296 GATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCT 240237 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 ||||| | | ||| || || | |||| | | ||| | || || | Sbjct 240236 TTCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGA 240177 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || || || ||||| || |||||||||| || | ||| || || | ||||||| Sbjct 240176 GTTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCA 240117 Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGG 70121 || |||||| | ||| ||||| || | |||||||| | ||| ||||| || Sbjct 240116 TCGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGG 240064 >seq33365 Length=5281 Score = 152 bits (168), Expect = 7e-32 Identities = 167/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||| ||||||||| ||| ||||| | |||||||||||| || ||||| | Sbjct 3539 CCTCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCT 3598 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| ||||| | |||||| ||||||||||| || || || || |||||||||| Sbjct 3599 TCAACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATG 3658 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA-TCAT--TATGTATCCACTTCTGTGCCCAATCAG 39815 | |||| | |||||| || ||| | || | || ||||||| | | |||||||| | Sbjct 3659 CCACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTG 3718 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | ||| ||||||| || |||| ||||| ||||||||||| Sbjct 3719 CCTTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAA 3758 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||||| |||||||||||| ||||||| || || || || |||||||||||||| | | Sbjct 4931 TTTGATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACATTTCC 4990 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 || ||||| |||||| || || ||||| || |||| Sbjct 4991 CAAATATCGGGATATTTAATGGGGAAAATGACGAATC 5027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686393197668360