Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq48425 125 6e-24 seq33365 116 3e-21 seq9515 104 2e-17 >seq48425 Length=361859 Score = 125 bits (138), Expect = 6e-24 Identities = 279/411 (68%), Gaps = 21/411 (5%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT---GAC 40922 |||||| | || || ||||||||| || | |||||||| || || | ||| ||| Sbjct 40765 GGTGATTTGGGACCCATTTATGGATCCCAATGGCGACATTACGGCGCCACGTATATTGAC 40824 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA-CAGTGCGTTATAGATAC 40981 | | | ||||||| || || | ||||| ||||| || | | | || |||| Sbjct 40825 GCCA---AAACTGATTACACGAACCAGGGAATCGATCAGTTGGCCGAGTGT-----ATAC 40876 Query 40982 GATT---AAATCCG-ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGG 41037 |||| |||| || |||| ||| || | || ||| || ||| |||||||| | || Sbjct 40877 GATTGATAAATACGGATCCGAATAATCGTAGAATTATAATGACCGCATGGAACCCCATGG 40936 Query 41038 ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAAT 41096 | || | |||||| |||| || || |||| ||| ||| || |||||||| || Sbjct 40937 ATGTGGACAAGATGGCGCTGCCTCCGTGCCATT-GTTTTGTTCAATTTTACGTAGAAAAC 40995 Query 41097 GGTGAA---CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCG 41153 || || || || ||||| || |||||| | | |||||||| | || || || Sbjct 40996 GGAGATACTCTTTCGTGTCATTTATATCAACGCAGTGCAGACATGGGTTTGGGTGTACCT 41055 Query 41154 TTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAA 41213 || || ||| | |||||| ||| | || | ||||||||||||||| ||||||| ||| Sbjct 41056 TTGAATATAACTAGTTATTGTCTATTGACTCAAATGATTGCACACGTTGCCAATTTCAAA 41115 Query 41214 CCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCAC 41264 | |||||||||| ||||| ||||| ||| ||||| | |||||| Sbjct 41116 ACGTGTGAATTTGTGTACACGACTGGAGACACTCATGTTTACTTGAATCAC 41166 >seq33365 Length=5281 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 |||| ||||||||| || ||||| || |||||||| || |||||||||||| Sbjct 4574 GAAAGGCATTTTATAAAGCATGTCTTGGCCTTCTTTGCTGCCTCTGATGGGATAGTCAAT 4515 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||| | || |||| | |||||||| ||| | | ||||| ||||||| ||| Sbjct 4514 GAAAATCTTGTGGAGAGGTTCTCCCAAGAAGTGCAAGTCACTGAAGCCAGATGTTTCTAT 4455 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||||||||||| || ||| |||| || || ||||| | | ||||||| || Sbjct 4454 GGATTTCAAATTGCCATGGAGAATGTTCACTCTGAGATGTATTCTTTGTTGATAGACACA 4395 Query 44009 TACATCAAAGAT 44020 || |||| |||| Sbjct 4394 TATATCAGAGAT 4383 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACA-TAAAGCAGACTGGGCCCTTA 44096 ||||||||||| || ||||| | || |||| |||| | || ||||| ||||| || Sbjct 3761 TTGTTTAATGCTATTGAAACTCTGCCATGCG--TAAAGAGGAAGGCAGATTGGGCTCTGC 3704 Query 44097 AATGGATAAAT-TCA--AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGG 44153 | ||||| | || | || |||||||||| || |||| || ||||||| ||| | Sbjct 3703 AGTGGATTGCTAGCAAGAGTGCAACTTTTGGAGAGCGTATTGTGGCATTTGCAGCTGTTG 3644 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGA 44213 | || || |||||||| || ||||| | ||||| ||||| ||||| || || | | Sbjct 3643 AGGGAATATTCTTTTCTGGCAGTTTTGCATCAATATTCTGGTTGAAGAAGCGCGGCCTAA 3584 Query 44214 TGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||||||| ||||| || ||||| ||||| Sbjct 3583 TGCCTGGATTGACATTCAGTAATGAATTAAT 3553 >seq9515 Length=717559 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 41017 TGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTAT 41076 |||| ||||||||||| | ||| | | |||||||||||||| || || || | Sbjct 249766 TGTGTTCGTGGAACCCACCTGACCTTAAGAAAATGGCATTGCCACCCTGCCA-CTGCCTT 249708 Query 41077 GT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| || || |||| |||||||| |||| ||||||| ||| | || Sbjct 249707 GTACAGTTCTATGTAGCTGATGGAGAACTGTCCTGTCTCATGTATCAGAGAAGTGCAGAT 249648 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 |||||| | || || || ||||| ||||| |||||| |||| ||||| ||||||| ||| Sbjct 249647 ATGGGATTGGGCGTTCCATTTAATATAGCCAGTTATTCTCTTCTCACACATATGATAGCA 249588 Query 41196 CACGTTACCAA 41206 || ||||||| Sbjct 249587 CATATTACCAA 249577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397165122944245