Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_027916.2
Length=160358
Score E
Sequences producing significant alignments: (Bits) Value
seq48425 95.1 1e-14
>seq48425
Length=361859
Score = 95.1 bits (104), Expect = 1e-14
Identities = 272/409 (67%), Gaps = 17/409 (4%)
Strand=Plus/Minus
Query 31154 CTTCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTC 31213
|||||| |||||| | |||| ||| | || ||| | | || || ||||| | | |
Sbjct 41173 CTTCGACGTGATTCAAGTAAACATGAGTGTCTCCAGTCGTGTACACAAATTCACACGTTT 41114
Query 31214 TTAGATGGGTCAATTTG-GCAATCACATGAACCAAAAGCGCATAACTCGCTATGTTGAAT 31272
| | || || ||| || ||||||| ||| ||| || |||||| | ||| || ||
Sbjct 41113 TGAAATTGG-CAACGTGTGCAATCATTTGAGTCAATAGACAATAACTAGTTATATTCAAA 41055
Query 31273 GGTACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCG 31332
||||||||||| |||| || ||| ||||||||||| ||| ||||| |||||||
Sbjct 41054 GGTACACCCAAACCCATGTCTGCACTGCGTTGATATAAATGACACGAAAGAGTATCTCCG 40995
Query 31333 GT---CACGTAAAATTGAA-ATAACACATGACAAGGCGGCAAAGCCAT----TTCACAGG 31384
| ||||||||||||| | |||| ||| || || |||| ||||| | |||
Sbjct 40994 TTTTCTACGTAAAATTGAACAAAACA-ATGGCACGGAGGCAGCGCCATCTTGTCCAC--- 40939
Query 31385 TATCGACGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGATCACGCTTAATCT 31444
||| | ||| ||||| ||| | | || | | ||| | | ||||| || |||
Sbjct 40938 -ATCCATGGGGTTCCATGCGGTCATTATAATTCTACGATTATTCGGATCCGTATTTATCA 40880
Query 31445 CTTCTAT-CACGGCTGTTATTTGATCGATTCCTTCACCCGTATAATTACTATCACATCCC 31503
| ||| ||| | | | ||||||||||| | ||| |||| | | | |
Sbjct 40879 ATCGTATACAC-TCGGCCAACTGATCGATTCCCTGGTTCGTGTAATCAGTTTTGGCGTCA 40821
Query 31504 TTGTAGGCTGCACCGAAATGTCGCCATTGAAACCCATAAATAGGTCCCA 31552
| || | || ||| ||||||||||||| | |||||||| |||||||
Sbjct 40820 ATATACGTGGCGCCGTAATGTCGCCATTGGGATCCATAAATGGGTCCCA 40772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 512632522576720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |