Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_027916.2 Length=160358 Score E Sequences producing significant alignments: (Bits) Value seq48425 95.1 1e-14 >seq48425 Length=361859 Score = 95.1 bits (104), Expect = 1e-14 Identities = 272/409 (67%), Gaps = 17/409 (4%) Strand=Plus/Minus Query 31154 CTTCGATGTGATTGACATAAATATGCGCATCGCCAATAGAGTGTACCAATTCCCCTGGTC 31213 |||||| |||||| | |||| ||| | || ||| | | || || ||||| | | | Sbjct 41173 CTTCGACGTGATTCAAGTAAACATGAGTGTCTCCAGTCGTGTACACAAATTCACACGTTT 41114 Query 31214 TTAGATGGGTCAATTTG-GCAATCACATGAACCAAAAGCGCATAACTCGCTATGTTGAAT 31272 | | || || ||| || ||||||| ||| ||| || |||||| | ||| || || Sbjct 41113 TGAAATTGG-CAACGTGTGCAATCATTTGAGTCAATAGACAATAACTAGTTATATTCAAA 41055 Query 31273 GGTACACCCAATCCCAAATCGGCAGATCGTTGATATAACAAACAGGAAAGTTCATCTCCG 31332 ||||||||||| |||| || ||| ||||||||||| ||| ||||| ||||||| Sbjct 41054 GGTACACCCAAACCCATGTCTGCACTGCGTTGATATAAATGACACGAAAGAGTATCTCCG 40995 Query 31333 GT---CACGTAAAATTGAA-ATAACACATGACAAGGCGGCAAAGCCAT----TTCACAGG 31384 | ||||||||||||| | |||| ||| || || |||| ||||| | ||| Sbjct 40994 TTTTCTACGTAAAATTGAACAAAACA-ATGGCACGGAGGCAGCGCCATCTTGTCCAC--- 40939 Query 31385 TATCGACGGGATTCCAAGCGCTTACTAACAAACGCCGACTGGTTGGATCACGCTTAATCT 31444 ||| | ||| ||||| ||| | | || | | ||| | | ||||| || ||| Sbjct 40938 -ATCCATGGGGTTCCATGCGGTCATTATAATTCTACGATTATTCGGATCCGTATTTATCA 40880 Query 31445 CTTCTAT-CACGGCTGTTATTTGATCGATTCCTTCACCCGTATAATTACTATCACATCCC 31503 | ||| ||| | | | ||||||||||| | ||| |||| | | | | Sbjct 40879 ATCGTATACAC-TCGGCCAACTGATCGATTCCCTGGTTCGTGTAATCAGTTTTGGCGTCA 40821 Query 31504 TTGTAGGCTGCACCGAAATGTCGCCATTGAAACCCATAAATAGGTCCCA 31552 | || | || ||| ||||||||||||| | |||||||| ||||||| Sbjct 40820 ATATACGTGGCGCCGTAATGTCGCCATTGGGATCCATAAATGGGTCCCA 40772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512632522576720