Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq18227 96.9 4e-15 >seq18227 Length=276284 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/366 (66%), Gaps = 5/366 (1%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || || || || ||||| | ||||| || | ||||||||||| || ||| ||| Sbjct 241094 TCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATTCGAATTCTTAGC- 241036 Query 118587 GTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTT 118645 ||| || ||||| || ||| ||| |||| | |||| ||||| |||| || || Sbjct 241035 TTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTGTGATGACTTT 240976 Query 118646 TGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGG 118705 || ||||| | | ||| | ||| | || | | ||||| || ||| || || Sbjct 240975 TGATATTTCTTTTAATTTTGTGAAATTATAAGT---TTTGTCTTCGTTTACAAACATATT 240919 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 | || ||||| || | |||||| |||| ||||| | | |||||| || | ||| Sbjct 240918 CAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTGTATTCAACAAT 240859 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||| || || | || | ||||| || || || || |||||||| || |||| Sbjct 240858 TTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTGCTTTTCCTGTT 240799 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 || | || ||||| | ||||||||| || || ||||| ||||| | | |||||| Sbjct 240798 GCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCTTCTATAATAGC 240739 Query 118886 CTTCCA 118891 ||||| Sbjct 240738 TTTCCA 240733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617970994808440