Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq51247 84.2 2e-11 seq18635 82.4 8e-11 >seq51247 Length=211339 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 159378 TGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTCGCCGTGTACTCGGGCTGCTC 159437 ||| || |||| || |||| |||| ||||| || | ||||||||||||| | |||| Sbjct 35640 TGCCTCCAGAAGCCGCAGGGAGCCCAGCGCGTCCACCTGCGCCGTGTACTCGCTCAGCTC 35699 Query 159438 AAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAGACCTCC 159483 || |||| ||||||||| |||||||| || ||||| || | |||| Sbjct 35700 GAAGGAGACCTTCACGTGGGACTGGGCGCCCAGGTTGTATATCTCC 35745 >seq18635 Length=192827 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||||||| || ||||| || ||||| || || ||||| Sbjct 152227 GTGAAAATATAACGCGGACTGGCCGAGTCTTTGCCGCCGCAGAGCCGGGTACCGAACTGA 152168 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| || ||||| | |||||||| |||||| | ||||| ||||||||||| Sbjct 152167 CCGCGTGGCTCTAGCAGGTTTATGTTGTTGGAGCCCACATAGTTCTGGGCCAAATTCACT 152108 Query 152149 ATCGT 152153 ||||| Sbjct 152107 ATCGT 152103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546805252830200