Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq17913 84.2 2e-11 >seq17913 Length=240356 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || ||||| | ||||| ||| || ||| | || || ||| | | Sbjct 96720 ATGCAGATTTTCGTAAAAACCTTGACTGGCAAAACCATCACACTCGAGGTTGAACCCTCT 96779 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| |||||| ||||||||||| |||| || | Sbjct 96780 GATACAATTGAAAAT--GTCAAAGCAAAAATCCAGGACAAAGAAGGCATTCCACCAGACC 96837 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || || ||||| || || | || || | ||||| | || || |||| Sbjct 96838 AGCAGCGACTTATCTTCGCCGGCAAGCAGCTTGAAGATGGACGCACACTTTCAGACTACA 96897 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || | |||||||| |||||||| | || || Sbjct 96898 ACATCCAAAAGGAGTCGACCCTACATTTGGTACTGCGTTTGAGAGGTGG 96946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355601963103423