Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq49719 203 3e-47 seq42682 87.8 1e-12 >seq49719 Length=92225 Score = 203 bits (224), Expect = 3e-47 Identities = 627/965 (65%), Gaps = 9/965 (1%) Strand=Plus/Plus Query 109135 ATCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTG 109194 |||| || ||||| ||||| ||||| || || | || || || || || || | Sbjct 79984 ATCGGTGCATACTTCGTCGAGTGGGGAGTCTATCCGAGGAAATTCCCAGTTGATAAGATT 80043 Query 109195 CCGTTGCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGC 109254 || ||||||| | || ||| | ||||||||||| ||||| || ||||| || || || Sbjct 80044 CCAGTGCCCAACCTGTCTCATCTTCTGTACGGTTTCATTCCTATTTGTGGTGGTGATGGT 80103 Query 109255 ATCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGC 109314 ||||||||| | || || || || |||| ||| |||||||| || ||| | Sbjct 80104 ATCAACGACAGTTTGAAGGAAATCGATGGAAGCTTTGCCGCGTTGCAACGGTCTTGCAGT 80163 Query 109315 GGTCGCGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAA 109374 |||||||| || ||||| ||||| || || ||| ||||| || |||| || || || Sbjct 80164 GGTCGCGAGGACTTCAAGGTGTCTATTCATGACCCATGGGCAGCCCTGCAGAAGCCACAG 80223 Query 109375 AAAGGCGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCC 109434 || || || | ||||| || || ||||| || |||||||| || ||||| | Sbjct 80224 AAGGGTCTGTCTAGTTGGAATGAACCTTACAAGGGTAACTTTGGTCAGCTGATGTCTCTA 80283 Query 109435 AAATTGGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGAC 109494 ||| ||| | || || | || ||||| || ||| | || || ||||| || | || Sbjct 80284 AAACAGGCCAGGCCCGACTTAAAGATTCTGCCTTCCGTCGGTGGCTGGACCTTAGCCGAT 80343 Query 109495 CCGTT-TTATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGA 109553 ||||| || || | || | ||| || ||||||| || || | || || || Sbjct 80344 CCGTTCTTCTTCTTTG-ATGATAAGGTTAAAAGAGATCGCTTTGTCGCTTCAGTAAAAGA 80402 Query 109554 ATTTTTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGG 109613 || | || ||||| ||||| ||||| || || || ||||||||||| || || || Sbjct 80403 CTTCCTGCAGACATGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 80462 Query 109614 CAAGGGTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTT 109673 || |||||||| || ||||| | | | | ||| || || |||| | | | Sbjct 80463 TAAAGGTGCCAACCCTCACCTCGGTGGCCCTA---AAGACGGCGAAGTGTACGTCACACT 80519 Query 109674 GTTAAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACC--AACAAAACGTAC 109731 | | |||||| | || | ||| || |||| || | | ||| || ||| ||| Sbjct 80520 GATGAAAGAGCTTCGTGAAATGCTGAACGAACTGGGCGCCGAGACCGGAAGGAAA--TAC 80577 Query 109732 GAATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCG 109791 || |||| ||| ||||| || || | || || || | || |||| ||| | Sbjct 80578 GAGCTGACATCCGCTATTAGTGCTGGATGGGACAAGATCCAGGTAATCGACTACAACAAG 80637 Query 109792 GCGCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCA 109851 ||||| | || ||||| | || || | |||| ||||| ||||| || || ||||| Sbjct 80638 GCGCAGAACTACATGGACCACATCTTCCTGATGAGCTACGACTTCAAGGGAGCCTGGTCC 80697 Query 109852 AACACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTG 109911 ||| | | || | || || | ||||||| || |||||| || || || Sbjct 80698 AACGACACCCTCGGTCACCAAACCCCACTGTACGCTCCAGCGTGGAGGCCCAAGGAGACT 80757 Query 109912 TACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTT 109971 ||||| | ||| | | ||| || | ||| || || |||| ||||| || || Sbjct 80758 TACACATCAGATTTCGGAGTCCAATACCTGCTCGCTCAGGGAGTGAACCCTAAGAAGATC 80817 Query 109972 ATAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACGCCGACGACGCG 110031 || | || || || |||||||| || |||||||| || ||| | || | ||| Sbjct 80818 ATTGTCGGAGTGGCCATGTACGGTCGTGGCTGGACCGGAGTCCAGAACTACACAGACAAC 80877 Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091 || || || ||| |||| |||| || || | || || ||| | |||| || ||| Sbjct 80878 AACCCCTTCACCGGCGTCGCGACCGGACCAGTCAAGGGAACCTGGCAGGACGGTGTCGTG 80937 Query 110092 GACTA 110096 ||||| Sbjct 80938 GACTA 80942 >seq42682 Length=462070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || || | ||| ||||| | || | ||| ||||| || || || ||||| |||| Sbjct 302996 TGCCTCCACGGAGTCTCAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 302937 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | |||| | |||||| | || ||||| ||| | || || | ||||||||| | Sbjct 302936 AGAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAG 302877 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||| || || |||||| ||| |||| | | || || | | ||| Sbjct 302876 GGATGCCTTCCTTATCCTGAATTTTAGCTTTAACATTCTCAATAGTGTCGGAAG--GTTC 302819 Query 101190 T--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | ||| | |||||||||||| || |||| ||||||| ||| || ||||| Sbjct 302818 TACTTCCAAGGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409360990895691