Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21]
60,049 sequences; 728,788,927 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq49719 203 3e-47
seq42682 87.8 1e-12
>seq49719
Length=92225
Score = 203 bits (224), Expect = 3e-47
Identities = 627/965 (65%), Gaps = 9/965 (1%)
Strand=Plus/Plus
Query 109135 ATCGCCGCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTG 109194
|||| || ||||| ||||| ||||| || || | || || || || || || |
Sbjct 79984 ATCGGTGCATACTTCGTCGAGTGGGGAGTCTATCCGAGGAAATTCCCAGTTGATAAGATT 80043
Query 109195 CCGTTGCCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGC 109254
|| ||||||| | || ||| | ||||||||||| ||||| || ||||| || || ||
Sbjct 80044 CCAGTGCCCAACCTGTCTCATCTTCTGTACGGTTTCATTCCTATTTGTGGTGGTGATGGT 80103
Query 109255 ATCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGC 109314
||||||||| | || || || || |||| ||| |||||||| || ||| |
Sbjct 80104 ATCAACGACAGTTTGAAGGAAATCGATGGAAGCTTTGCCGCGTTGCAACGGTCTTGCAGT 80163
Query 109315 GGTCGCGACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAA 109374
|||||||| || ||||| ||||| || || ||| ||||| || |||| || || ||
Sbjct 80164 GGTCGCGAGGACTTCAAGGTGTCTATTCATGACCCATGGGCAGCCCTGCAGAAGCCACAG 80223
Query 109375 AAAGGCGTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCC 109434
|| || || | ||||| || || ||||| || |||||||| || ||||| |
Sbjct 80224 AAGGGTCTGTCTAGTTGGAATGAACCTTACAAGGGTAACTTTGGTCAGCTGATGTCTCTA 80283
Query 109435 AAATTGGCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGAC 109494
||| ||| | || || | || ||||| || ||| | || || ||||| || | ||
Sbjct 80284 AAACAGGCCAGGCCCGACTTAAAGATTCTGCCTTCCGTCGGTGGCTGGACCTTAGCCGAT 80343
Query 109495 CCGTT-TTATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGA 109553
||||| || || | || | ||| || ||||||| || || | || || ||
Sbjct 80344 CCGTTCTTCTTCTTTG-ATGATAAGGTTAAAAGAGATCGCTTTGTCGCTTCAGTAAAAGA 80402
Query 109554 ATTTTTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGG 109613
|| | || ||||| ||||| ||||| || || || ||||||||||| || || ||
Sbjct 80403 CTTCCTGCAGACATGGAAGTTCTTCGACGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 80462
Query 109614 CAAGGGTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTT 109673
|| |||||||| || ||||| | | | | ||| || || |||| | | |
Sbjct 80463 TAAAGGTGCCAACCCTCACCTCGGTGGCCCTA---AAGACGGCGAAGTGTACGTCACACT 80519
Query 109674 GTTAAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACC--AACAAAACGTAC 109731
| | |||||| | || | ||| || |||| || | | ||| || ||| |||
Sbjct 80520 GATGAAAGAGCTTCGTGAAATGCTGAACGAACTGGGCGCCGAGACCGGAAGGAAA--TAC 80577
Query 109732 GAATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCG 109791
|| |||| ||| ||||| || || | || || || | || |||| ||| |
Sbjct 80578 GAGCTGACATCCGCTATTAGTGCTGGATGGGACAAGATCCAGGTAATCGACTACAACAAG 80637
Query 109792 GCGCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCA 109851
||||| | || ||||| | || || | |||| ||||| ||||| || || |||||
Sbjct 80638 GCGCAGAACTACATGGACCACATCTTCCTGATGAGCTACGACTTCAAGGGAGCCTGGTCC 80697
Query 109852 AACACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTG 109911
||| | | || | || || | ||||||| || |||||| || || ||
Sbjct 80698 AACGACACCCTCGGTCACCAAACCCCACTGTACGCTCCAGCGTGGAGGCCCAAGGAGACT 80757
Query 109912 TACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTT 109971
||||| | ||| | | ||| || | ||| || || |||| ||||| || ||
Sbjct 80758 TACACATCAGATTTCGGAGTCCAATACCTGCTCGCTCAGGGAGTGAACCCTAAGAAGATC 80817
Query 109972 ATAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACGCCGACGACGCG 110031
|| | || || || |||||||| || |||||||| || ||| | || | |||
Sbjct 80818 ATTGTCGGAGTGGCCATGTACGGTCGTGGCTGGACCGGAGTCCAGAACTACACAGACAAC 80877
Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091
|| || || ||| |||| |||| || || | || || ||| | |||| || |||
Sbjct 80878 AACCCCTTCACCGGCGTCGCGACCGGACCAGTCAAGGGAACCTGGCAGGACGGTGTCGTG 80937
Query 110092 GACTA 110096
|||||
Sbjct 80938 GACTA 80942
>seq42682
Length=462070
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069
|||| || || | ||| ||||| | || | ||| ||||| || || || ||||| ||||
Sbjct 302996 TGCCTCCACGGAGTCTCAACACTAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGG 302937
Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129
| |||| | |||||| | || ||||| ||| | || || | ||||||||| |
Sbjct 302936 AGAGAGTTCTTCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCTGGAG 302877
Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189
| | |||||| || || |||||| ||| |||| | | || || | | |||
Sbjct 302876 GGATGCCTTCCTTATCCTGAATTTTAGCTTTAACATTCTCAATAGTGTCGGAAG--GTTC 302819
Query 101190 T--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238
| ||| | |||||||||||| || |||| ||||||| ||| || |||||
Sbjct 302818 TACTTCCAAGGTAATAGTTTTACCTGTCAGGGTTTTAACAAAGATCTGCAT 302768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409360990895691
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |