Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18227 574 7e-159 seq33365 122 1e-22 seq33683 96.9 5e-15 >seq18227 Length=276284 Score = 574 bits (636), Expect = 7e-159 Identities = 1217/1798 (68%), Gaps = 35/1798 (2%) Strand=Plus/Minus Query 76759 ACTTTA-TTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGT 76817 |||||| |||| || || | ||| |||||||| | | || ||||| || | | Sbjct 241841 ACTTTAATTTTGGATTTGTCAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTT 241782 Query 76818 AGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGT 76877 | ||||||||| ||||| || || || | |||| | |||||||| || || ||| Sbjct 241781 AAATAGTACATTCCAGTCTTGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGT 241722 Query 76878 TTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCT 76937 || ||| |||| || |||| ||| ||||| | || ||||| || || || || ||| Sbjct 241721 TTCCCGTAATTAGGTTCTGCTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCT 241662 Query 76938 CCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAA 76997 |||||||| || ||||||| ||| ||||||| | ||| ||||| | ||||||| | Sbjct 241661 CCTCTATCCGCAGCCATTTGAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTAC 241602 Query 76998 ACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATC-TGATAT 77053 | | | | || || | || | ||| ||||||| || |||||| | ||| || Sbjct 241601 AAATCTCTAATTTCTTGGGGTATATTTTCAATATTTTGGATAGAACCATTGTTATGA-AT 241543 Query 77054 AATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATG 77113 ||| |||||| || || || | |||||| | | || ||| | || || | ||| Sbjct 241542 AATGACATTCTTCATGTCTTCGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATG 241483 Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 | |||| || | |||||||||||||||||| ||||| | |||||| || ||| | Sbjct 241482 ATGATTCACCACTTGAAATTCTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAA 241423 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 |||||| | |||||||||||||| | ||| || || ||||||||||||||||| || || Sbjct 241422 TGGTTCAAATGATTCATTGTTTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGC 241363 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATC 77293 | ||| | ||| | || ||||| || ||||||||||| || | | |||| | Sbjct 241362 TAGCAAAAGTGAATTGCGAAGGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTT 241303 Query 77294 CCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATA 77353 ||||||||||| |||| | ||| | |||||||| || || || | ||| || Sbjct 241302 CCAAAGATCTGTAGGTGTTTTGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGG 241243 Query 77354 TGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 ||| | || || || |||||| |||| |||||||||||||| ||||||| Sbjct 241242 ACTTCCTTCGTAAGTACTGTATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAG 241183 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCAATACTAT 77472 ||||| || ||||| |||||||| |||| | ||| | || | | |||| ||| | Sbjct 241182 AGCTCCATAGTAAATGGTTTCGAATATCTGTTGATTCA-ATAATATCGCTTTCTCACTTT 241124 Query 77473 CAAACGGATAATGT-AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATA 77531 || | || | | | | || | ||| | || || | ||||||||| |||||||||||| Sbjct 241123 CATA-GGGCAGTCTCATTAGGACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATA 241065 Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 || || |||||| |||| ||| | ||||||||||| | ||||| | || | || ||| Sbjct 241064 GGCCTGTGTCTCATATTCGAATTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATA 241005 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTT-AGTTTAAGAAA--ATCA 77648 ||||| || | |||| | ||||| | || ||| | ||| |||| || | Sbjct 241004 ATTTTGTTTAAATTTTGTGTGATGACTTTTGATATTTCTTTTAATTTTGTGAAATTATAA 240945 Query 77649 AATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACC 77708 | | | || | |||||||| ||||||||||| || |||| |||||| || || || Sbjct 240944 GTTTTGTCTTCGTTTACAAACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACT 240885 Query 77709 TCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCC 77768 |||| | | |||| | || || ||||| ||||| || ||||| || || || Sbjct 240884 TCATCTTCAGAAGTGTATTCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCT 240825 Query 77769 AGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCG 77828 | ||||| ||| ||||| || | ||||| ||||| || || | || | || || || Sbjct 240824 AAATTTTTTTGATTGCTTTTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCA 240765 Query 77829 GTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGC----TTTTATCATAGA 77884 || || | || | ||| ||||||| |||||| | ||| ||| || || | | Sbjct 240764 GTCTCTACTTGGGCTTCTATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACA 240705 Query 77885 TTTGTATCGCCTCTCTCTTTCATATTGAGTATATA--GCCGTTCAAATTCATCTCCCCAA 77942 | ||| |||| ||||||||| ||||| ||| ||||| || |||||||| Sbjct 240704 TAATTAT----TCTCCTTTTCATATTTTTCATATAAGGCC--TCAAACTCTTCTCCCCAG 240651 Query 77943 ACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT- 78001 ||| | ||| ||||| | || ||||||||||| ||||| |||| | | || Sbjct 240650 GTGTCAGTTAGTCCGGGGCAATTATGAGGGCACATCAAGCTCCAGTTTCCAT-TACTTTC 240592 Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 ||||| |||||| || | |||||||||||| | ||| ||| | || | | | | Sbjct 240591 AACTCTTTTCATGAATAAATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAAC 240532 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||| || || || ||||||||||| ||||| |||||||| | ||||| | |||||| || Sbjct 240531 TTCCTCTTTGCCAGTATTCTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCACGG 240472 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGC 78181 ||||| |||| ||| | | || || | ||||| ||||| ||||| | |||||| || Sbjct 240471 TTCTAAGTATACTGCAAATGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGC 240412 Query 78182 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGA 78241 ||||||||||| ||||| | ||| || | | ||| || || ||||||||||||| Sbjct 240411 TGTGTTATTATACACTCTGAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGC 240352 Query 78242 AATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCA 78297 |||| | || |||| | ||| |||||| || || || || || || Sbjct 240351 AATAGTTGTGCCTTTTGCTCTAAT----GCAATGGACATGCAATCCAATCCCACCAGCAG 240296 Query 78298 TCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCA 78357 || ||||| | || || | || | ||||| || || |||||||| |||||||| Sbjct 240295 ATTTTGATATCAAGGCACATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTT 240236 Query 78358 TCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATG 78417 ||||| | | ||| || || | |||| | | ||| | || || | | Sbjct 240235 TCATGGCTATTAAAAAGCATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAG 240176 Query 78418 TCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATT 78477 | || ||||| ||||| |||||||||| |||| ||| || || | ||||||| | Sbjct 240175 TTGGGCTGGCATGAGTAAAATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCAT 240116 Query 78478 CTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 | || ||| ||| ||||| | | |||||||| | ||| ||||| || || || Sbjct 240115 CGATATCCTCCCCATGTATTCCAATTGAAACACGCATAAGCATGTGCTGTGGCCTCTC 240058 >seq33365 Length=5281 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||| ||||||||| ||| ||||| | || |||||||| || || || || Sbjct 3541 TCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTC 3600 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| ||||||| || ||| |||||||||||||| || || || || |||||||| Sbjct 3601 AACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCC 3660 Query 48285 GTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 || | |||||| || | || | | | |||||| | | |||||||| ||| Sbjct 3661 ACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCC 3720 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 48387 ||| ||||||| || |||| ||||| ||||||||||| | ||||| Sbjct 3721 TTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 >seq33683 Length=341392 Score = 96.9 bits (106), Expect = 5e-15 Identities = 234/352 (66%), Gaps = 3/352 (1%) Strand=Plus/Minus Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043 || ||| | || | | | ||| | ||||| | | |||| | ||||| | ||| |||| Sbjct 86078 CCAATGCTGGCTGCAGCTTGTAAATCTGTAGAAATGGCAATGAAAAAGTGTCCGAATGGA 86019 Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103 |||||| ||||| | ||||||||||||||| |||| ||||| ||||| || ||| | Sbjct 86018 ATGTTTTCAGAAATTAAATATGATGGTGAAAGAGTGCAAGTACATAAGAAAGGTAAGGAG 85959 Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAG 171163 || | ||| |||| | ||||| || | |||| ||||| | || |||| Sbjct 85958 TTCAAATATTTTTCCAGAGCATTAAAACCTGTGATGGCACACAAAGTGAGTCATTTCAAA 85899 Query 171164 GAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCTTGGATTCCGAAATTGTT 171223 || || |||||| |||||||| |||| | | | | || || ||| | ||| | | Sbjct 85898 GATTATCTTCCTCAAGCATTTCCCAAAGGTGACGATCTAATATTAGATGCTGAAGTGTTA 85839 Query 171224 CTAGTTGA--TGAACA-TAATGTTCCACTTCCGTTTGGAAGTCTAGGAATACACAAAAAG 171280 | || || |||||| | | ||||| || ||||||| | || | ||||||| | Sbjct 85838 ATGGTGGATGTGAACACTGGTAAGCCACTGCCATTTGGAACCTTGGGGAAACACAAACAT 85779 Query 171281 AAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTGTTTATACT 171332 ||| | |||| |||| | | ||||||| | ||||| || | |||| Sbjct 85778 GCAGAATTCAAAGATGCACAAGTATGTTTGTATATATTTGACTGCCTTTACT 85727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694147372915360