Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq18227 533 2e-146 seq33365 145 1e-29 >seq18227 Length=276284 Score = 533 bits (590), Expect = 2e-146 Identities = 1190/1774 (67%), Gaps = 37/1774 (2%) Strand=Plus/Minus Query 75373 CAAC-GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTT 75431 |||| ||||||||||| | || || ||||| || | || ||||||||| ||||| | Sbjct 241822 CAACTGTGAACTGAATAGCGTTGGCGGCAGGTTTGGTTCTTAAATAGTACATTCCAGTCT 241763 Query 75432 TTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGG 75491 | || || | |||| | |||||||| || |||||||| ||| | || || | Sbjct 241762 TGAGCCCAATTTTCCAGGCATAGAAATGAATTGAAGTTAGTTTCCCGTAATTAGGTTCTG 241703 Query 75492 CTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTT 75551 ||| ||| ||||| | || ||||| || || || || ||||||||||| || ||||||| Sbjct 241702 CTACATGGATATTGAAAGATTGACTCTGGTCAATAAATGCTCCTCTATCCGCAGCCATTT 241643 Query 75552 TTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTG 75611 ||| ||||||| | ||| ||||| | ||||||| | | | | | || || | | Sbjct 241642 GAATAGTGGTCTTAACGGAAATCTCCCACACAGTTTTGTACAAATCTCTAATTTCTTGGG 241583 Query 75612 GAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCAT 75668 | | |||| ||||||| || || || | | ||||| |||||| || || | Sbjct 241582 GTATATTTTCAATATTTTGGATAGAACCATTGTTATGAATAATGACATTCTTCATGTCTT 241523 Query 75669 CATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATT 75728 | | |||||| | | || ||| | || || | |||| |||| || | |||||||| Sbjct 241522 CGTCCCACAAGTCAGCTTGAGTCAAATCCCTGAGTAAATGATGATTCACCACTTGAAATT 241463 Query 75729 CTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGT 75788 |||||||||| ||||||| |||||| || ||| ||||||| | |||||||||| Sbjct 241462 CTCCAGACAACACTCTTCTTTGGTAAATGTTTGATGTAAATGGTTCAAATGATTCATTGT 241403 Query 75789 TTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGA 75848 |||| | ||| || || || |||||||| ||||| || || | ||| | ||| | | Sbjct 241402 TTCCGAGAATCTGTGCTGTAGAAGCAGTTGGCATTGGAGCTAGCAAAAGTGAATTGCGAA 241343 Query 75849 GACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAA 75908 | ||||| || ||||||||||| || | | |||| | ||||||||||| ||| Sbjct 241342 GGCCATGCTTTGCAATTTTATCTTTGAGCTCTGTCCAGTTCCAAAGATCTGTAGGTGTTT 241283 Query 75909 CATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGT 75968 | ||| | |||||||| || || || | || || ||| | || || || Sbjct 241282 TGTTCCACATGTCGTATTGAAGTATACCTTGACTGGCTGGACTTCCTTCGTAAGTACTGT 241223 Query 75969 AAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTT 76028 | || || ||||| |||||||| ||||| || || | || || || ||||| |||| Sbjct 241222 ATACACCTTCTTTTTCTGCTAGTTCACAACTTGCTTCCAGAGCTCCATAGTAAATGGTTT 241163 Query 76029 CGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGT-AAAAGA 76087 |||| |||| | ||| | | ||||| ||| || | ||| | | | | || Sbjct 241162 CGAATATCTGTTGATTCAATAATATCGCTTTCTCACTTTC-ATAGGGCAGTCTCATTAGG 241104 Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 | ||||| || || ||||||||||| |||||||||||||| || |||||| |||| ||| Sbjct 241103 ACAAATGTGTCGGCCAGTCCCTGAACACCAATACCAATAGGCCTGTGTCTCATATTCGAA 241044 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT---TCTG 76204 | | ||||||||| | || || | || | ||| |||||||| || | ||| | || Sbjct 241043 TTCTTAGCTTCTGGTACTGGATAGAAGTTCACATCAATAATTTTGTTTAAATTTTGTGTG 240984 Query 76205 ACAACTACTTTAACCACGTCCTTT-AGTTTGAGAAA--ATCAAATTTTCCATCTATCACA 76261 | ||| ||| | | || ||| | |||| |||| || | ||| | || | ||| Sbjct 240983 ATGACT--TTTGA-TATTTCTTTTAATTTTGTGAAATTATAAGTTTTGTCTTCGTTTACA 240927 Query 76262 AACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATAT 76321 |||||||| | |||||| || |||| |||||| || || || |||| || | ||| Sbjct 240926 AACATATTCAAAGCTATTGAAGCTAAATTACATACAGCCACTTCATCTTCAGAAGTGTAT 240867 Query 76322 TGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTC 76381 | | || || || || ||||| || || || || ||||| | ||||| ||| ||||| Sbjct 240866 TCAACAATTTCAGTACAGAGATTGCTGCATTTAATCGTTCCTAAATTTTTTTGATTGCTT 240807 Query 76382 TTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCG 76441 || |||| || ||||| || || | | | || |||||||| || | || | ||| Sbjct 240806 TTCCTGTTGCAGGAGTCTTTGTATAACATGTATGGTGTTCCAGTCTCTACTTGGGCTTCT 240747 Query 76442 ATAATAGATTTCCAGACGACT------CTAGCTTTTATTATAGATTTGTATCGCTTCTCT 76495 ||||||| |||||| | ||| | | ||| | | | | | || ||||| Sbjct 240746 ATAATAGCTTTCCATAATACTTGAGCACGAACTTGTCTAACATAATT------ATTCTCC 240693 Query 76496 CTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGA 76555 ||||||||| | |||||| ||||| || |||||||| ||| | || || Sbjct 240692 TTTTCATATTTTTCATATAAGGCCTCAAACTCTTCTCCCCAGGTGTCAGTTAGTCCGGGG 240633 Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAAAGAG 76614 || | || || |||||||| ||| | |||| | | || ||| | |||||| || | Sbjct 240632 CAATTATGAGGGCACATCAAGCTCCAGTTTCCAT-TACTTTCAACTCTTTTCATGAATAA 240574 Query 76615 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATT 76674 |||||||||||| | ||| ||| | || | | | | ||| || || || ||||| Sbjct 240573 ATCAGGTATCCACAAGGCATAAAACAATTCCCTAGCACGAACTTCCTCTTTGCCAGTATT 240514 Query 76675 CTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 76734 |||||| ||||| || ||||| | ||||| | |||||| ||||||| |||| || | Sbjct 240513 CTTTTTCAGATCCAGAAACTCAAATATATCCGCATGCCACGGTTCTAAGTATACTGCAAA 240454 Query 76735 AACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCT 76794 |||| || | ||||| ||||| ||||| | |||||| || ||||||||||| ||||| Sbjct 240453 TGCACCTGGCCTCTTATTTCCTCCTTGATCGACATATCTAGCTGTGTTATTATACACTCT 240394 Query 76795 CAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC 76854 | ||| || | | || || || |||||||||||||| |||| | || ||| Sbjct 240393 GAGCATGGGTACTAGACCATTCGAAACACCATTTGTTCCAGCAATAGTTGTGCCTTTTGC 240334 Query 76855 ACGAATATTACTAATAGATAGG----CCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 | ||| ||| || | | || || || || || ||| || || | |||| Sbjct 240333 TCTAAT----GCAATGGACATGCAATCCAATCCCACCAGCAGATTTTGATATCAAGGCAC 240278 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | || | || ||||| || |||||||| || ||||| ||||| | | ||| | Sbjct 240277 ATTGCTTAAGAGTATCATATATTCCCTCTATGCTGTCATCTTTCATGGCTATTAAAAAGC 240218 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 | || | |||| | | ||| | || || | || || |||||||| | Sbjct 240217 ATGATGATAATTGAGGTTTGGGAGTGGCAGCTGAGAAGAGAGTTGGGCTGGCATGAGTAA 240158 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAA 77090 | |||||||||| |||| ||| || || | ||| |||| || |||||| ||| | Sbjct 240157 AATATTTTTCAGACAGTAAATTATAAGTGTTGATAGCTGCATCGATATCCTCCCCATGTA 240098 Query 77091 TTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 |||| | | |||||||| | ||| ||||| || Sbjct 240097 TTCCAATTGAAACACGCATAAGCATGTGCTGTGG 240064 >seq33365 Length=5281 Score = 145 bits (160), Expect = 1e-29 Identities = 169/226 (75%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||| ||||||||| ||| ||||| | ||||||||||| || ||||| || Sbjct 3541 TCATCTCGTGAAATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTC 3600 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| ||||| | || ||| |||||||||||||| || || ||||| || ||||| Sbjct 3601 AACCAGAATATTGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCC 3660 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA-TCAT--TATGAATCCACCTTTGAGCCCAATCAGCC 46830 |||| | |||||| || | ||| || | || ||||||| |||||||||| ||| Sbjct 3661 ACAATACGCTCTCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCC 3720 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 || ||||||| || |||| ||||| ||||||||||| | ||||| Sbjct 3721 TTCCTCTTTACGCATGGCAGAGTTTCAATAGCATTAAACAAAAAGT 3766 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 ||||||| |||||||||||| |||||||||| || || || || ||||| ||||| | | Sbjct 4931 TTTGATAGATCTACTTCTTCGACTGTCCAGAAAGAAGCTTCAGCCTTTTTGTACATTTCC 4990 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATC 47212 || ||||| |||||| || || ||||| || |||| Sbjct 4991 CAAATATCGGGATATTTAATGGGGAAAATGACGAATC 5027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712399262527680