Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calycopis_20cecrops_20[genbank_20GCA_5F001625245.1_202016-04-21] 60,049 sequences; 728,788,927 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq33365 122 9e-23 >seq33365 Length=5281 Score = 122 bits (134), Expect = 9e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | |||||||| || || | ||| |||||| ||||| |||| ||| || || || Sbjct 4383 ATCTCTGATATATGTGTCTATCAACAAAGAATACATCTCAGAGTGAACATTCTCCATGGC 4442 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||| ||||| ||||| |||||||| ||||||| | ||| || || | | || || | Sbjct 4443 AATTTGAAATCCATAGAAACATCTGGCTTCAGTGACTTGCACTTCTTGGGAGAACCTCTC 4502 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | |||||| || || || |||||| ||||||||||| || | |||| ||||| Sbjct 4503 CACAAGATTTTCATTGACTATCCCATCAGAGGCAGCAAAGAAGGCCAAGACATGCTTTAT 4562 Query 23952 AAAATGTCTTTC 23963 |||||| ||||| Sbjct 4563 AAAATGCCTTTC 4574 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 23544 AATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATAT 23603 ||| ||||||||| ||||| ||||| ||||||| || || || || | ||| ||||| Sbjct 3552 AATTAATTCATTACTGAATGTCAATCCAGGCATTAGGCCGCGCTTCTTCAACCAGAATAT 3611 Query 23604 TGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGT 23663 || ||||| || |||||||| || ||||||||||| ||||| ||||||| ||| Sbjct 3612 TGATGCAAAACTGCCAGAAAAGAATATTCCCTCAACAGCTGCAAATGCCACAATACGCTC 3671 Query 23664 ACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC 23723 ||||| |||||| | | || |||||| | | ||||| |||||| ||||| Sbjct 3672 TCCAAAAGTTGCACTCTTGCTAGCAATCCACTGCAGAGCCCAATCTGCCTTCCTCTTTAC 3731 Query 23724 ACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT 23759 || | |||||||| || || || | |||||| Sbjct 3732 GCATGGCAGAGTTTCAATAGCATTAAACA-AAAAGT 3766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521096564588600