Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4527 140 4e-28 seq8255 114 2e-20 seq9256 100 3e-16 >seq4527 Length=1270594 Score = 140 bits (154), Expect = 4e-28 Identities = 201/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 || ||||||| || || |||||| || || |||||| ||| || || | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || | ||| ||||| || ||||||||||| || |||||| || ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || ||| ||| | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAA 54683 ||||| || | || | ||||| ||| || || |||| Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 113 bits (124), Expect = 5e-20 Identities = 220/319 (69%), Gaps = 12/319 (4%) Strand=Plus/Plus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| |||||||||||| | | |||||| ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 53610 TATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 ||| |||| ||||| | || | |||||| | |||| | | || ||||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTTG-CAATTGTTTTAAGTTTAT 574334 Query 53667 GAAAATCAAA----TTGTCCATC-TATTA-CAAACATGTTCAATGCAATAGATGCCAGAT 53720 |||||| || |||| || ||||| ||||||| || | ||||||||||||||||| Sbjct 574335 CAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGAT 574394 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 |||| || || || || || | | | ||||| || | |||||||| | || || | Sbjct 574395 TACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTGC 574454 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 | ||||| || || | | || |||||| |||| || || ||| |||||||| | Sbjct 574455 ATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGCA 574514 Query 53841 TGAATGGCGTACCAGTTTC 53859 | | || || ||||| || Sbjct 574515 TATAAGGAGTTCCAGTCTC 574533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 53145 ||||| || || || | |||||| ||| | ||||| ||| | | ||| ||||| Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 53146 AACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203 || | ||| |||||||| |||||||| | | || |||||||| || |||||| Sbjct 573633 GACGA--TGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGT 573690 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | || || |||||||| || ||||| || || || || || ||||||||||| | | Sbjct 573691 TCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATC 573750 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 53323 || | |||||| | |||| | | |||||| ||||| | ||||||| ||| Sbjct 573751 AAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCAT 573810 Query 53324 AGATCCGACGGT 53335 | || | |||| Sbjct 573811 AAATTTGTCGGT 573822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 || ||| || || |||||||||| |||| |||||| |||||| ||||||||||| Sbjct 574733 TTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGACACATCAAGCT 574792 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||| | | | | || | || |||| |||||||||||| || ||||| ||| | ||| Sbjct 574793 CCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATAGACCATAAAA 574852 Query 54070 TAGATCTCTGGTTC-TATGTTCCTCGTTTCCTGTA 54103 || ||||| | || ||||| | | | ||||||| Sbjct 574853 TAAGTCTCTAGCTCGCATGTTTC-CATCTCCTGTA 574886 >seq8255 Length=582279 Score = 114 bits (126), Expect = 2e-20 Identities = 141/191 (74%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 24401 AACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 24458 || |||||| ||||| | || || ||||||||| ||||||||||| || ||||| ||| Sbjct 398062 AATATATGTTTCAATAAGCAAGGA--ATACATTTCAGAATGAATGTTCTCTATGGCAATT 398005 Query 24459 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCT 24518 || ||||| |||||||| | || || | ||| | ||||||| || |||| || Sbjct 398004 TGGAATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATC 397945 Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 | ||| ||||| || ||||| ||| || ||||| || ||||| ||||| ||||| Sbjct 397944 AGATTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAG 397885 Query 24579 TATTTTTCGTC 24589 ||| ||||||| Sbjct 397884 TATCTTTCGTC 397874 >seq9256 Length=299688 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 |||| |||| ||| ||||| ||||||||| || ||||| ||||| ||||| | || Sbjct 296556 TATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCACCATAATAGAGAGTC 296615 Query 53459 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 53518 || || || | |||| || | | ||||| |||| ||||||||||| | | | Sbjct 296616 TCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAATGGATATCTCATTAAG 296675 Query 53519 ATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| || |||||||||||||| ||||||||||| Sbjct 296676 ATAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641514377680