Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7864 98.7 9e-16 seq6884 98.7 9e-16 seq7770 91.5 1e-13 >seq7864 Length=237132 Score = 98.7 bits (108), Expect = 9e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| |||||| | |||||||| |||||||||||||||||| | |||| | | || Sbjct 61214 AGATCAGCAAAGATTGATCTTTGCTGGCAAACAACTGGAAGATGGTAGAACTCTTTCTGA 61273 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||| ||||| | || | || || || ||||| || || Sbjct 61274 TTACAATATTCAGAAGGAGTCTACCTTACATTTAGTATTGCGTTTACGGGGTGG 61327 >seq6884 Length=256371 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || || ||||| || || ||| ||| | || Sbjct 112988 ATGCAGATTTTTGTCAAGACTCTTACCGGTAAAACAATCACATTGGAAGTCGAAGCATCA 113047 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| |||||| ||||||||||| | || |||||| Sbjct 113048 GATACGATAGAGAATGTTAAAGCCAAAATTCAAGATAAAGAAGGCATTCCTCCGGATCAA 113107 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || |||||||| ||||| | ||| || | ||||||||| Sbjct 113108 CAGAGATTAATTTTTGCTGGAAAACAACTCGAAGACGGCCGCACTTTGTCAGATTACAAT 113167 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||| || | || |||||| | || ||||| Sbjct 113168 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTACGACTTCGCGGAGG 113214 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || || ||||| || || |||| ||| | | Sbjct 113216 ATGCAGATTTTTGTCAAGACTCTCACCGGTAAAACAATCACATTGGAAATCGAAGCATCT 113275 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || |||| ||||||| | ||||||||| | | ||||| Sbjct 113276 GATACGATAGAGAATGTTAAAGCAAAAATTCAGGTTAAAGAAGGCATCACTCCGGATCAG 113335 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| | |||||||| ||||| ||| || | ||||||||| Sbjct 113336 CAGAGATTGATCTTTGCTGTAAAACAACTCGAAGACGGTCGCACTTTGTCAGATTACAAT 113395 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||| || | || |||||| | || ||||| Sbjct 113396 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTACGACTTCGCGGAGG 113442 >seq7770 Length=449423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | ||||| | || |||||||||||||| ||| ||| | | Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | || |||||| || || ||||| | || ||||| Sbjct 87045 AGATACCATAGAGAATGTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGATCA 86986 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || || ||||| || ||||| || |||||| || |||| | | || || || Sbjct 86985 GCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGCAGAACTCTTTCTGACTATAA 86926 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| ||||||||||| |||||| | || || ||| | || ||||| Sbjct 86925 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGTGGAGG 86878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || | || |||||||| || |||||||||||| Sbjct 88607 GATAAAGAAGGCATTCCTCCTGATCAGCAGCGTCTGATCTTTGCTGGAAAACAACTGGAA 88548 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | | || || ||||| ||||| |||||||| ||||| |||| || Sbjct 88547 GATGGTAGAACTCTTTCTGACTATAATATCCAGAAAGAATCTACACTTCATCTGGTTTTG 88488 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 88487 CGTCTTCGTGGAGG 88474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428279667257105