Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6884 96.9 3e-15 seq7770 91.5 1e-13 seq7864 89.7 4e-13 >seq6884 Length=256371 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||||||||| | || |||||||| ||| | || ||||| || ||| Sbjct 113072 AAAATTCAAGATAAAGAAGGCATTCCTCCGGATCAACAGAGATTAATTTTTGCTGGAAAA 113131 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||||| | ||| || | ||||||||||||||||||||||| ||||| || Sbjct 113132 CAACTCGAAGACGGCCGCACTTTGTCAGATTACAATATTCAAAAGGAATCCACTCTGCAT 113191 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || |||||| | || ||||| Sbjct 113192 TTAGTTTTACGACTTCGCGGAGG 113214 >seq7770 Length=449423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | ||||| | || |||||||||||||| ||| ||| | | Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | || |||||| || || ||||| | || ||||| Sbjct 87045 AGATACCATAGAGAATGTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGATCA 86986 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || ||||| || ||||| | |||||| || |||| | | || || || Sbjct 86985 GCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGCAGAACTCTTTCTGACTATAA 86926 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||||||| |||||| | || || ||| | || ||||| Sbjct 86925 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGTGGAGG 86878 >seq7864 Length=237132 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| |||||| | |||||||| ||||||||| |||||||| | |||| | | || Sbjct 61214 AGATCAGCAAAGATTGATCTTTGCTGGCAAACAACTGGAAGATGGTAGAACTCTTTCTGA 61273 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||| ||||| ||||| | || | || || || ||||| || || Sbjct 61274 TTACAATATTCAGAAGGAGTCTACCTTACATTTAGTATTGCGTTTACGGGGTGG 61327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410742773930474