Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7770 109 6e-19 seq6884 107 2e-18 seq699 96.9 4e-15 >seq7770 Length=449423 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || |||||||| |||||||||||||| ||||| |||| |||||||| | Sbjct 87561 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 87502 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | ||||| | |||||||| || || || | || | Sbjct 87501 TGACACAATAGAAAACG-TAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATC 87443 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | || | || || ||||| |||| |||| || || || || || | Sbjct 87442 AACAACGTTTAATTTTTGCTGGAAAACAATTGGAAGACGGACGGACGCTTTCGGATTATA 87383 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| ||||| || |||| || ||||| || |||| Sbjct 87382 ACATTCAGAAAGAATCCACACTTCATCTGGTTCTGCG 87346 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || |||||||| |||||||||||||| ||||| |||| |||||||| | Sbjct 87789 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 87730 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | ||||| | |||||||| || || || | || | Sbjct 87729 TGACACAATAGAAAACG-TAAAAGCCAAAATCCAGGACAAAGAAGGTATTCCTCCTGATC 87671 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | || | || || ||||| |||| |||| || || || || || | Sbjct 87670 AACAACGTTTAATTTTTGCTGGAAAACAATTGGAAGACGGACGGACGCTTTCGGATTATA 87611 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| ||||| || |||| || ||| |||| |||| Sbjct 87610 ACATTCAGAAAGAATCCACACTTCATTTAGTTCTGCG 87574 Score = 109 bits (120), Expect = 6e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || |||||||| |||||||||||||| ||||| |||| |||||||| | Sbjct 88245 AATGCAAATCTTTGTAAAAACACTCACGGGCAAAACTATCACACTCGAAGTCGAAGCTTC 88186 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | ||||| | |||||||| || || || |||| | Sbjct 88185 TGACACAATAGAAAACG-TGAAAGCCAAAATCCAGGACAAAGAAGGAATTCCTCCGGATC 88127 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | || | || |||||||| || || || | | || || || || | Sbjct 88126 AGCAGCGTTTGATTTTTGCTGGCAAACAACTTGAAGATGGTAGGACTCTTTCTGATTATA 88067 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||| || |||| || || || || |||| Sbjct 88066 ACATCCAGAAAGAATCCACTCTTCACCTGGTTCTGCG 88030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || |||||||||||| | || || ||||| || Sbjct 88700 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACCATCACCCTTGAGGTAGAAGCTTCC 88641 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | || || | || ||||| ||||| || | || ||| Sbjct 88640 GACACTATAGAGAATGTCAAAGCCAAGATACAAGATAAAGAAGGCATTCCTCCTGATCAG 88581 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || ||||| ||||| || | | || || ||||| || Sbjct 88580 CAGCGTCTGATCTTTGCTGGAAAACAACTGGAAGATGGTAGAACTCTTTCTGACTATAAT 88521 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| || | || || ||||| || ||||| Sbjct 88520 ATCCAGAAAGAATCTACACTTCATCTGGTTTTGCG 88486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || ||||||||||| || | || |||||||| | Sbjct 87105 AATGCAGATTTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 87046 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | | || | |||||| | ||||| || || || || | || || Sbjct 87045 AGATACCATAGAGAATGTAAAAGCAAAAATCCAAGACAAGGAAGGAATTCCTCCCGATCA 86986 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | || || |||||||| || || | | || || ||||| || Sbjct 86985 GCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGCAGAACTCTTTCTGACTATAA 86926 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||| | || || || |||| ||||| Sbjct 86925 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCG 86890 >seq6884 Length=256371 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || |||||||| | || || ||||| | Sbjct 112760 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTGGAAGCATCA 112819 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||| | ||||||| ||||| || || ||||| | || || Sbjct 112820 GACACAATCGAGAACG-TCAAAGCTAAAATTCAGGACAAGGAAGGTATCCCTCCAGATCA 112878 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || |||||||| || || | ||||| ||| ||||||||| Sbjct 112879 GCAGAGATTGATCTTTGCTGGAAAACAGCTCGAAGATGGCCGCACACTCTCCGACTACAA 112938 Query 40869 CATCCAGAAGGAG 40881 ||| ||||||||| Sbjct 112939 CATTCAGAAGGAG 112951 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||| | || || |||||||| || |||| || |||||| | Sbjct 112076 ATGCAGATTTTTGTGAAGACGTTAACTGGAAAAACCATAACTCTCGAAGTTGAAGCCTCT 112135 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| ||| |||| ||||||||||| || || | ||||| Sbjct 112136 GACACCATCGAGAACG-TAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCACCTGACCA 112194 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | || || ||||| || || |||| || ||| | || || || Sbjct 112195 GCAGCGTTTGATTTTTGCTGGAAAACAACTTGAAGACGGACGTACCTTGTCTGATTATAA 112254 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||| |||| || ||| | || | | ||| | ||||| Sbjct 112255 TATCCAAAAGGAATCCACTCTTCATTTGGTCCTCAGATTGCGTGGCGG 112302 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| ||||| | ||||||||||| || || | || || || || | || | ||| Sbjct 112610 AAGGCCAAAATCCAAGACAAAGAGGGAATTCCTCCTGATCAACAGAGATTGATTTTCGCT 112669 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| |||| ||||| ||| ||| ||||| || || ||||| |||| Sbjct 112670 GGCAAGCAGCTGGAGGACGGACGCACGCTCTCCGATTACAATATTCAAAAGGAATCCACT 112729 Query 40888 CTGCATCTAGTGTTGCG 40904 |||||| |||| || || Sbjct 112730 CTGCATTTAGTTTTACG 112746 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || |||||||| ||||| | || || ||||| | Sbjct 114128 ATGCAGATTTTCGTCAAAACTTTGACAGGCAAAACTATCACTTTGGAGGTAGAAGCTTCA 114187 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| ||||||| |||||||||||||| || | || ||| Sbjct 114188 GATACAATCGAGAATGTCAAGGCGAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 114247 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | |||||||| || || || |||| ||||| | || || || Sbjct 114248 CAGAGATTGATTTTTGCGGGCAAGCAACTCGAGGACGGACGCACATTGTCAGATTATAAT 114307 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || |||| | ||||| || | || | || ||||| Sbjct 114308 ATTCAGAAAGAATCCACATTACATCTTGTACTTCGACTTAGAGGCGG 114354 >seq699 Length=139783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || || |||||||| |||| ||||||||| | Sbjct 6154 ATGCAGATTTTCGTGAAAACCCTCACTGGTAAGACCATCACTCTCGAGGTCGAAGCCTCT 6095 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | || || | || |||||||| ||||| | || ||| Sbjct 6094 GATACCATTGAAAATGTGAAAGCTAAGATCCAGGATAAAGAGGGAATCCCACCAGATCAG 6035 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| |||| || |||||||| | || || | || || ||| || || ||| Sbjct 6034 CAACGACTTATCTTTGCTGGCAAACAATTAGAAGATGGACGTACTCTCTCTGATTATAAC 5975 Query 40870 ATCCAGAA 40877 || || || Sbjct 5974 ATTCAAAA 5967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515149703370160