Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6411 111 2e-19 seq3280 107 2e-18 seq10738 105 8e-18 seq6643 104 3e-17 seq3233 104 3e-17 seq9735 102 9e-17 seq7770 102 9e-17 seq9469 98.7 1e-15 seq6884 96.9 4e-15 >seq6411 Length=821124 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 235351 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 235292 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 235291 TGACCACTATACTACCGAGGA 235271 Score = 107 bits (118), Expect = 2e-18 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 234815 AAAAATTAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 234874 Query 60115 ACTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 234875 ACAGACCACTATACTACCGAGGA 234897 >seq3280 Length=217266 Score = 107 bits (118), Expect = 2e-18 Identities = 74/83 (89%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 68400 AAAAATATCCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 68341 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 68340 ACTGACCACTATACTACCGAGGA 68318 >seq10738 Length=587473 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 335909 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 335968 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 335969 TAACCACTATACTACCGAGGA 335989 >seq6643 Length=222409 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| || ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 78774 AAAAATAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 78833 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 78834 CTGACCACTATACTACCGAGGA 78855 >seq3233 Length=183561 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 166016 TCTCCTCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 166075 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 166076 ATACTATCGAGGATT 166090 >seq9735 Length=441931 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 146812 AAAAAAATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 146871 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 146872 TAACCACTATACTATCGAGGA 146892 >seq7770 Length=449423 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || || || | ||| |||||||||||||| || |||| ||||| | | Sbjct 86890 CGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCTGCCA 86949 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || |||||||| |||||||| || ||||| || ||||| |||| || | | |||||| Sbjct 86950 TCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCCTTG 87009 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||||||| ||| | || | | || || | ||| || || | || ||| Sbjct 87010 TCTTGGATTTTTGCTTTTACATTCTCTATGGTATCTGAAGCTTCGACTTCAAGAGTAATG 87069 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||||| || || || || ||||| || |||||| Sbjct 87070 GTTTTGCCTGTAAGAGTTTTCACAAAAATCTGCATT 87105 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||||| || ||||| | |||| || || ||||| || ||||| | Sbjct 87561 TCCTCCTCGAAGACGCAGAACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGA 87620 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||||| |||| || | || || ||||| || || | || || || || | || Sbjct 87621 AAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGG 87680 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||||| |||||| ||| | | | | ||||| | ||| || Sbjct 87681 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGAC 87740 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||||| ||||||||||| || || |||||||||||||||||| Sbjct 87741 TTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87789 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||||| |||| || | ||| || || || || || ||||||| Sbjct 88017 TCCTCCTCGAAGACGCAGAACCAGGTGAAGAGTGGATTCTTTCTGGATGTTATAATCAGA 88076 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||||| | || || || || || ||||| || || | |||||||| || | || Sbjct 88077 AAGAGTCCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGCTGCTGATCCGGAGG 88136 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||||| |||||| ||| | | | | ||||| | ||| || Sbjct 88137 AATTCCTTCTTTGTCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGAC 88196 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||||| ||||||||||| || || |||||||||||||||||| Sbjct 88197 TTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 88245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | ||||| |||| ||| | |||| || || ||||| || ||||| | Sbjct 87333 TCCACCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGA 87392 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || ||||| |||| || | || || ||||| || || | || || || || | || Sbjct 87393 AAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGG 87452 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||||| |||||| ||| | | | | ||||| | ||| || Sbjct 87453 AATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGAC 87512 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| ||||| ||||||||||| || || |||||||||||||||||| Sbjct 87513 TTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | |||||| |||| ||| | ||| || || || ||||| || |||| Sbjct 88473 TCCTCCACGAAGACGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGA 88532 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || || || || ||||| || || || |||||||| || | || Sbjct 88533 AAGAGTTCTACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAGG 88592 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || || || || || ||||| || | | |||||| | ||| || Sbjct 88593 AATGCCTTCTTTATCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTAC 88652 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || || |||||||||||||| Sbjct 88653 CTCAAGGGTGATGGTTTTTCCAGTAAGGGTTTTCACAAAGATTTGCAT 88700 >seq9469 Length=914958 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/81 (88%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 50478 AAAAATT--CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 50421 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||| |||||| Sbjct 50420 TAACCACTATACTATCGAGGA 50400 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 50940 AAAAAGATCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGTAC 50999 Query 60117 TCACCACTATACTACCGAGGATT 60139 | |||||||||||| |||||||| Sbjct 51000 TAACCACTATACTATCGAGGATT 51022 >seq6884 Length=256371 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| |||||||| ||||| ||||||| || || || |||| || Sbjct 112284 ACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGACAAGGTACGTCCGTCTTCA 112225 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || ||||| || || | ||||||||||| | || | | ||| |||||| || Sbjct 112224 AGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCC-TG 112166 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | |||| || | || | | ||||| | ||| || |||| || |||||||| Sbjct 112165 AATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACTTCGAGAGTTATGGTTTT 112106 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||| ||||| || ||||| Sbjct 112105 TCCAGTTAACGTCTTCACAAAAATCTGCAT 112076 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | || ||| | ||||||||||| ||| ||| |||||||| |||||||| | Sbjct 112530 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAA 112471 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||| || ||||| || || | || ||||| || | || Sbjct 112470 AGCGTGCGACCATCTTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG 112411 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| ||| ||| | |||| ||||| || | | || || | ||||| Sbjct 112410 ATACCTTCCTTATCC-TGAATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCAC 112352 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||| || || || | || || |||||||| |||||| Sbjct 112351 TTCCAACGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATCTGCATT 112303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || || ||||||| ||| |||||||||||||||||||| | | || || || Sbjct 113658 CGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGTACGTCCG 113599 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||||| ||||| || || | || |||||| || | || | || || || Sbjct 113598 TCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTA 113539 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| |||||| ||| | || | | ||| || | ||| || || | ||||| Sbjct 113538 TCC-TGAATTTTTGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGAT 113480 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || ||||| ||||| || ||||| Sbjct 113479 TGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || || ||||||| ||| |||||||||||||||||||| | || ||| || || Sbjct 113202 CGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGGCCG 113143 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || || || ||||| || || | || ||| || || | || | || || ||| Sbjct 113142 TCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGAATGC-CTTCTTT 113084 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | ||| |||| | ||| | || | | ||| || | ||| || || | ||||| Sbjct 113083 ATCTTGAATTTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGAT 113024 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || || ||||| ||||| || ||||| Sbjct 113023 TGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571740468953480