Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8255 87.8 2e-12 >seq8255 Length=582279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/258 (69%), Gaps = 16/258 (6%) Strand=Plus/Minus Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 |||| || | ||| |||| | ||| || | ||| | |||| ||| | | || ||| Sbjct 398894 ATAAGATAATAAGACTTTTGTATACATTACTTTTT--CAAATCCTAATGCGACGAACAAT 398837 Query 16067 CTATCCGCCACAAATTCTATATA-CTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 16125 |||||||| || ||||| || || ||| ||| | ||| ||||||||||| |||| Sbjct 398836 CTATCCGCAACGAATTCGATGTAGCTGCA-CATGAGTGTACAATTCATTCCTATCAATTG 398778 Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT--A 16183 || || | ||||| ||| ||||| | | ||| || | || || || || || || | Sbjct 398777 GACTGGTAATGCTTGTGTCAAAAATTCCTGTTCAATTTCTACAGCATCCATTATAATTGA 398718 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTA---ATAA-GTGTTTAAACATTATACAAGC 16239 | || |||| || || ||| ||||| | || |||||||||||||| ||| || Sbjct 398717 TTTC-----ACACG-TTCAAAGGATGGTTTTTGTACAATGTGTTTAAACATTAAACATGC 398664 Query 16240 AAAATCACAATGCAATCC 16257 |||||| ||||| ||||| Sbjct 398663 AAAATCGCAATGTAATCC 398646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462449612912600