Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6884 98.7 8e-16 seq3036 89.7 4e-13 >seq6884 Length=256371 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| ||| ||| | || || || |||||||| || || Sbjct 112951 CTCCTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCAAA 112892 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| | ||| || || ||||| | ||| ||||||||| |||||| || || Sbjct 112891 GATCAATCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATTTTAGCTTTGACGTT 112832 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||||| |||| || || ||||| || || |||||||| || Sbjct 112831 CTCGATTGTGTCTGATGCTTCCACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGAC 112772 Query 45325 AAAGATTTGCAT 45336 || || ||||| Sbjct 112771 GAAAATCTGCAT 112760 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || | |||||| | ||||| || || ||| ||||| || || || || || | Sbjct 112302 CCGCCACGCAATCTGAGGACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGAC 112243 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| || ||||||||||| || || ||||| ||||| ||||| || || Sbjct 112242 AAGGTACGTCCGTCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGA 112183 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||| |||||| ||| ||| ||| || | | | | |||| | || || Sbjct 112182 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACT 112123 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || | || || || || || || | ||||||||||| || |||||| ||| Sbjct 112122 TCGAGAGTTATGGTTTTTCCAGTTAACGTCTTCACAAAAATCTGCATGGTGC 112071 >seq3036 Length=722649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 13254 GCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGAC 13313 || || || || || |||||||| || | ||||| | ||| ||||| |||| | Sbjct 94351 GCAGAGGCTGGCTTTTTCTACACAGGAAATGGTGATCAAACATTGTGCTATCATTGCGGA 94410 Query 13314 GGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTC 13373 || ||| ||| |||||||||||| ||||||| ||||||||||| |||| | ||||||| Sbjct 94411 GGAGGACTGAGAGATTGGGAGCCAGAAGATGATCCTTGGGAACAACATGCTAAATGGTTC 94470 Query 13374 GACCGTTGC 13382 ||| |||| Sbjct 94471 GACTATTGC 94479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395023241561611