Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6884 100 2e-16 seq7770 93.3 3e-14 >seq6884 Length=256371 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| || | || || ||||||||||||||||| |||| Sbjct 112530 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAA 112471 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | ||||| || ||| |||| | |||||| |||||| || Sbjct 112470 AGCGTGCGACCATCTTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG 112411 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||| ||||| | ||| || || | ||| Sbjct 112410 ATACCTTCCTTATCCTGAATCT-TTGCTTTGACATTCTCAATTGTATCTGATGCCTCCAC 112352 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || ||||| ||||| ||||| || |||||| Sbjct 112351 TTCCAACGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATCTGCATT 112303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| ||||||||||| || | | ||| || |||||| | ||||| || Sbjct 114096 GTAGATTCTTTCTGAATGTTGTAATCAGAGAGTGTACGACCATCTTCAAGCTGTTTTCCA 114037 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTT- 18247 ||| |||| | ||| || |||||| || | ||||||||| || ||||| |||||| Sbjct 114036 GCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGAATTT-TTGCTTT 113978 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 ||| | | | | ||||| | || ||| | ||||| |||| || || | || Sbjct 113977 GACATTTTCTATCGTGTCTGATGCTTCAACTTCTAATGTGATAGTTTTACCAGTGAGAGT 113918 Query 18308 TTTTACAAAAATTTGCAT 18325 || |||||||||||||| Sbjct 113917 CTTGACAAAAATTTGCAT 113900 >seq7770 Length=449423 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || |||| |||||| || |||||||| || ||||| || || | Sbjct 88017 TCCTCCTCGAAGACGCAGAACCAGGTGAAGAGTGGATTCTTTCTGGATGTTATAATCAGA 88076 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || ||| |||||| | ||||||||| ||| | || | | || |||||| || Sbjct 88077 AAGAGTCCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGCTGCTGATCCGGAGG 88136 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || |||| | |||| || | | | | |||||| | ||| Sbjct 88137 AATTCCTTCTTTGTCCTGGATTT-TGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGA 88195 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| ||||||| || | |||||||||||| ||||||||| Sbjct 88196 CTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 88245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| |||||||| |||||||| |||||||| || || | Sbjct 87333 TCCACCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGA 87392 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||||| || ||| | || | | ||||||||| || Sbjct 87393 AAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGG 87452 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || |||| | |||| || | | | | |||||| | ||| Sbjct 87453 AATACCTTCTTTGTCCTGGATTT-TGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGA 87511 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| ||||||| || | |||||||||||| ||||||||| Sbjct 87512 CTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87561 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || || | |||||||| |||||||| |||||||| || || | Sbjct 87561 TCCTCCTCGAAGACGCAGAACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGA 87620 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||||||||||| || ||| | || | | ||||||||| || Sbjct 87621 AAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGG 87680 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || |||| | |||| || | | | | |||||| | ||| Sbjct 87681 AATACCTTCTTTGTCCTGGATTT-TGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGA 87739 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | ||||| ||||||| || | |||||||||||| ||||||||| Sbjct 87740 CTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | || || | ||||||||| |||||||| || ||||| || || | Sbjct 87789 TCCTCCTCGAAGACGCAGAACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAGA 87848 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || ||| |||||| | |||||| || ||| | || | | || |||||| || Sbjct 87849 AAGAGTCCTACCATCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGAGG 87908 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || |||| | |||| || | | | | |||||| | ||| Sbjct 87909 AATTCCTTCTTTGTCCTGGATTT-TGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGA 87967 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| || || ||||||| || | ||| || ||||||||||||||| Sbjct 87968 CTTCAAGTGTAATAGTTTTGCCTGTGAGTGTCTTCACAAAAATTTGCATT 88017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379294110455295