Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4527 140 4e-28 seq8255 104 3e-17 seq9256 100 4e-16 >seq4527 Length=1270594 Score = 140 bits (154), Expect = 4e-28 Identities = 201/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 || ||||||| || || |||||| || || |||||| ||| || || | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || || | ||| ||||| || ||||||||||| || || ||| || ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 |||||| ||| | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAA 63921 ||||| || | |||| || || ||| || || |||| Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 109 bits (120), Expect = 7e-19 Identities = 219/319 (69%), Gaps = 12/319 (4%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||||||| | | |||||| ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 62848 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62904 ||| |||| ||||| | ||| | |||||| | |||| | | || ||||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTTG-CAATTGTTTTAAGTTTAT 574334 Query 62905 GAAAATCAAA----TCGCCCATC-TATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 62958 |||||| || | | || ||||| ||||||| || | ||||| ||||||||||| Sbjct 574335 CAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGAT 574394 Query 62959 TACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 63018 |||| || || || || || | | | ||||| || | |||||||| | || || | Sbjct 574395 TACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTGC 574454 Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 | ||||| || || | | || |||||| |||| || || ||| |||||||| | Sbjct 574455 ATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGCA 574514 Query 63079 TGAATGGAGTACCAGTTTC 63097 | | ||||| ||||| || Sbjct 574515 TATAAGGAGTTCCAGTCTC 574533 Score = 96.9 bits (106), Expect = 4e-15 Identities = 175/256 (68%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 ||||| || || || | |||||| ||| | ||||| ||| | | ||| || || Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 || | ||||||||| |||||||| | | || |||||||| || |||||||| Sbjct 573633 GACGATGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGTTC 573692 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | || || |||||||| || ||||| || || || || || ||||||||||| | ||| Sbjct 573693 GATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATCAA 573752 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 | |||||| | |||| | | |||||| ||||| | | ||||||| ||| | Sbjct 573753 AAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCATAA 573812 Query 62564 ATCCGACGGTACAACA 62579 || | |||| |||| Sbjct 573813 ATTTGTCGGTTTAACA 573828 >seq8255 Length=582279 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||| ||||||||||| || ||||| || || ||||| |||||||| | || || Sbjct 398038 ATACATTTCAGAATGAATGTTCTCTATGGCAATTTGGAATCCATAGAAACAACGTGCTTC 397979 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | ||| | |||||| || |||| || | ||| ||||| || ||||||||| Sbjct 397978 AGCAATTTTTACTTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCAGA 397919 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 34036 || ||||| || ||||| ||||| ||||| ||| ||||||| Sbjct 397918 AGCAGCAAAGAATGCCAAGACATGAGAGATAAAGTATCTTTCGTC 397874 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33386 TTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCAT 33445 ||||| |||||| ||| | | ||||||||| || |||||||| || || | ||| Sbjct 398864 TTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCACAT 398805 Query 33446 CATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 33505 | | ||||||||||||||| | || ||||| | || || | |||||| ||||| Sbjct 398804 GAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTGTTC 398745 Query 33506 AATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA 33565 ||| ||| |||| ||||||| || | || ||| ||| |||| | Sbjct 398744 AATTTCTACAGCATCCATTATAATTGATTTCACACGTTCAAAGGATGGTTTTTGTACAAT 398685 Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 ||||||||||| |||||||| |||||||| || | |||| Sbjct 398684 GTGTTTAAACATTAAACATGCAAAATCGCAATGTAATCCCT 398644 >seq9256 Length=299688 Score = 100 bits (110), Expect = 4e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTA 62686 ||||| |||||| |||| ||| ||||| || |||||| || ||||| ||||| || Sbjct 296546 ATATGATACATATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCACCATA 296605 Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 ||| | || ||||| || | |||| || | | ||||| |||| ||||||||||| Sbjct 296606 ATAGAGAGTCTCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAATGGATA 296665 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 | | | ||||| || || ||||||||||| ||||||||||| Sbjct 296666 TCTCATTAAGATAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629732645478480