Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4527 125 7e-24 seq8255 104 2e-17 seq9256 86.0 6e-12 >seq4527 Length=1270594 Score = 125 bits (138), Expect = 7e-24 Identities = 176/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 37114 TCTCTCAATAGGTGTGGATTTACAACCTGA--AAATCTCCAGATAATACTCTTCTTGTAT 37171 |||| ||||| || ||||| || | ||| || ||||| || ||||| | |||| || Sbjct 573613 TCTCGCAATAAATGAGGATTGACGA--TGACGAATTCTCCCGACAATACACGTCTTACAT 573670 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | ||||| || || || ||||| ||||| || ||||| | ||| ||||| | || || | Sbjct 573671 AGATATTACTCGTGTACGGTTCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACG 573730 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||| || | ||| |||||| | ||| ||| | ||| ||| || Sbjct 573731 CCGTTGGCATAGGTGCAATCAAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTT 573790 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAG 37349 | | || || |||||||||||||| ||| || || | || |||||| |||||||| || Sbjct 573791 TCAATTTATCCCAATCCCATAAATTTGTCGGTTTAACATT--CCACATGTCATATTGGAG 573848 Query 37350 AAT 37352 || Sbjct 573849 GAT 573851 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||||||||||| || || || |||||| | || || |||| ||||||||||| Sbjct 575363 AGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAATATCTTTCAGACAAATAATT 575422 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 ||||||||||| | | || || || | |||||||| | || ||| ||||| | Sbjct 575423 GTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAATACCGACAGCTACTCTCATCAA 575482 Query 38532 CATATGTTGTGGTCTTTCTATTATTTT 38558 ||||||||| |||||||||| ||| || Sbjct 575483 CATATGTTGAGGTCTTTCTACTATCTT 575509 Score = 102 bits (112), Expect = 8e-17 Identities = 139/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTT---AGCTAGT 37410 ||||| || | ||| | | | |||||| ||||||| || | ||| ||||| | Sbjct 573959 CCTTTGCTGACCGGACTACCTTCATATGTTTCATAAGTGCCTT---TTTCGGCAGCTAAT 574015 Query 37411 TCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATT 37470 | |||||| | ||| | || ||||||| | ||||||||||||| ||||| | | | Sbjct 574016 TTGCAACTTGCTTCCAAGGCACCATAATAAAGAGTTTCGAAAATTTTGATATTGAGTTCT 574075 Query 37471 TTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGA 37530 ||||| |||| ||| ||||||| ||| | || ||||| ||| |||| || ||||| || Sbjct 574076 TTTGCCTCTTTGCTCTCGAATGGATATCGCATTAATAAAAAGGCATCCGCTAAACCTTGT 574135 Query 37531 ACACCGATACCTA 37543 | |||||||||| Sbjct 574136 ATTCCGATACCTA 574148 >seq8255 Length=582279 Score = 104 bits (114), Expect = 2e-17 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 11417 TTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAAT 11476 || |||||||| ||||||||| | ||||| | || |||||||| || |||||| Sbjct 398877 TTGTATACATT----ACTTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAAT 398822 Query 11477 TCTATATA-CTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAAC 11535 || || || ||| |||| | ||||||||| ||||| | | || || | || Sbjct 398821 TCGATGTAGCTGC-ACATGAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTG 398763 Query 11536 TGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTT 11595 ||||||||| |||| ||| || | || ||||| || || || || | | | ||| Sbjct 398762 TGTCAAAAATTCCTGTTCAATTTCTACAGCATCCATTATAATTGATTTCACACGTTCAAA 398703 Query 11596 AGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 |||||| |||| | ||||||||||||||||| |||||||| |||||||| || Sbjct 398702 GGATGGTTTTTGTACAATGTGTTTAAACATTAAACATGCAAAATCGCAATGTAATCC 398646 Score = 96.9 bits (106), Expect = 3e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 |||||| || || | || ||||||||| |||||||| || || || || ||||| || Sbjct 398059 ATATGTTTCAATAAGCAAGGAATACATTTCAGAATGAATGTTCTCTATGGCAATTTGGAA 398000 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 |||||||||||| ||||| || | | | ||| || | ||||| || | ||| Sbjct 397999 TCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATCAGATT 397940 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||| || || |||||| || ||||| ||||| | | ||| ||||||||| | Sbjct 397939 CTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAGTATCT 397880 Query 12079 TTCGTC 12084 |||||| Sbjct 397879 TTCGTC 397874 >seq9256 Length=299688 Score = 86.0 bits (94), Expect = 6e-12 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 37108 ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTT 37167 ||||| |||| ||| | |||| || |||| | || | | ||||||| | | | Sbjct 296193 ATTAGATCTCGCAACAAACGTGGCTTAACAATTCGGAATTGTTTAGATAATGCATGTATC 296252 Query 37168 GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTA 37227 ||| || ||||| |||||||| |||| || ||||||| ||| ||||| | || Sbjct 296253 ACATAAATGTTGCTTGTATATGGCTCAACTGATACATTATTTTCTAACATTTGTGCCATA 296312 Query 37228 GATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTC 37287 ||||| | |||| | ||||||| | ||| | || |||||| | || ||| Sbjct 296313 AATGCATCTGACATTTGCGCTATTAATAAAGAATTGCGCACACCATGT-TCTTCGATCTT 296371 Query 37288 TTT-TTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATAT 37344 ||| |||| | |||||| ||||||||||||||||| || | || ||||||||| || Sbjct 296372 TTTCTTTAATGTATTCCAGTCCCATAAATCTGTTGGTTTGGCATT--CCACATATCGTAC 296429 Query 37345 TGTA 37348 |||| Sbjct 296430 TGTA 296433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468461601861040