Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4527 143 4e-29 seq8255 113 6e-20 seq9256 100 4e-16 >seq4527 Length=1270594 Score = 143 bits (158), Expect = 4e-29 Identities = 202/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 66495 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 || ||||||| || || |||||| || || |||||| ||| || || | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || || || || | ||| ||||| || ||||||||||| || |||||| || ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 |||||| ||| | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 66674 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 66714 ||||| || | || | ||||| ||| || || |||| Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 113 bits (124), Expect = 6e-20 Identities = 220/319 (69%), Gaps = 12/319 (4%) Strand=Plus/Plus Query 65581 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 65640 |||| |||||||||||| | | |||||| ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 65641 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 ||| |||| ||||| | ||| | |||||| | |||| | | || ||||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTTG-CAATTGTTTTAAGTTTAT 574334 Query 65698 GAAAATCAAA----TCGCTCATC-TATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 65751 |||||| || | | | || ||||| ||||||| || | ||||| ||||||||||| Sbjct 574335 CAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGAT 574394 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 |||| || || || || || | | | ||||| || | |||||||| | || || | Sbjct 574395 TACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTGC 574454 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 | ||||| || || | | || |||||| |||| || || ||| |||||||| | Sbjct 574455 ATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGCA 574514 Query 65872 TGAATGGAGTACCAGTTTC 65890 | | ||||| ||||| || Sbjct 574515 TATAAGGAGTTCCAGTCTC 574533 Score = 93.3 bits (102), Expect = 6e-14 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 65117 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 65176 ||||| || || || | |||||| ||| | ||||| ||| | | ||| ||||| Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 65177 AACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234 || | ||| |||||||| |||||||| | | || |||||||| || |||||| Sbjct 573633 GACGA--TGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGT 573690 Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294 || | || || |||||||| || ||||| || || || || || ||||||||||| | | Sbjct 573691 TCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATC 573750 Query 65295 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 65354 || | |||||| | |||| | | |||||| ||||| | ||||||| ||| Sbjct 573751 AAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCAT 573810 Query 65355 AGATCCGACGGT 65366 | || | |||| Sbjct 573811 AAATTTGTCGGT 573822 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 || || || |||||||||| |||| |||||| |||||| ||||||||||| ||| Sbjct 574737 AATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGACACATCAAGCTCCAA 574796 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAA 66104 | | | | || | || |||| |||||||||||| || ||||| ||| | |||||| Sbjct 574797 TTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATAGACCATAAAATAAG 574856 Query 66105 TCTCTGGTTC-TATGTTCCTCGTTTCCTGTA 66134 ||||| | || ||||| | | | ||||||| Sbjct 574857 TCTCTAGCTCGCATGTTTC-CATCTCCTGTA 574886 >seq8255 Length=582279 Score = 113 bits (124), Expect = 6e-20 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 36424 AACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 36481 || |||||| ||||| | || || ||||||||| ||||||||||| || ||||| ||| Sbjct 398062 AATATATGTTTCAATAAGCAAGGA--ATACATTTCAGAATGAATGTTCTCTATGGCAATT 398005 Query 36482 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCT 36541 || ||||| |||||||| | || || | ||| | ||||||| || |||| || Sbjct 398004 TGGAATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATC 397945 Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 | ||| ||||| || ||||| ||| || ||||| || ||||| ||||| ||||| Sbjct 397944 AGATTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAG 397885 Query 36602 TATTTTTCGT 36611 ||| |||||| Sbjct 397884 TATCTTTCGT 397875 >seq9256 Length=299688 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 65489 |||| |||| ||| ||||| ||||||||| || ||||| ||||| ||||| | || Sbjct 296556 TATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCACCATAATAGAGAGTC 296615 Query 65490 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 65549 || || || | |||| || | | ||||| |||| ||||||||||| | | | Sbjct 296616 TCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAATGGATATCTCATTAAG 296675 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 ||||| || |||||||||||||| ||||||||||| Sbjct 296676 ATAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658084020716440