Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7770 127 2e-24 seq6884 107 2e-18 seq4527 86.0 6e-12 seq699 82.4 8e-11 >seq7770 Length=449423 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||||||||||||| ||||| || |||||||| ||||| || Sbjct 86877 GCCTCCACGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGA 86936 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || ||||| ||||||||||||||| | || |||||||||||||||||||| Sbjct 86937 AAGAGTTCTGCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAGG 86996 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||||||| ||||| | || | || || | | || || Sbjct 86997 AATTCCTTCCTTGTCTTGGATTTTTGCTTTTACATTCTCTATGGTATCTGAAGCTTCGAC 87056 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || | ||||| || || || ||||| Sbjct 87057 TTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAAATCTGCAT 87104 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||||||||||| ||||| ||||| || ||||||||||| Sbjct 87790 CCTCCTCGAAGACGCAGAACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAGAA 87849 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||| |||||| | |||| ||| |||||||| ||||| Sbjct 87850 AGAGTCCTACCATCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGAGGA 87909 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | |||||| | | || || Sbjct 87910 ATTCCTTCTTTGTCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACT 87969 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || | || || || || |||||||| Sbjct 87970 TCAAGTGTAATAGTTTTGCCTGTGAGTGTCTTCACAAAAATTTGCAT 88016 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| |||||| |||| || || ||||| |||||||||||||| Sbjct 87562 CCTCCTCGAAGACGCAGAACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAA 87621 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||||| |||||| | || | |||||| ||||| ||||| Sbjct 87622 AGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGA 87681 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||||| | ||| | |||||| | | || || Sbjct 87682 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGACT 87741 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || | |||||||| || |||||||| Sbjct 87742 TCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCAT 87788 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | ||||| || || ||||| || ||||||||||| Sbjct 88018 CCTCCTCGAAGACGCAGAACCAGGTGAAGAGTGGATTCTTTCTGGATGTTATAATCAGAA 88077 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||| |||||| | |||| ||| |||||||| ||||| Sbjct 88078 AGAGTCCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGCTGCTGATCCGGAGGA 88137 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | ||| | |||||| | | || || Sbjct 88138 ATTCCTTCTTTGTCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACT 88197 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || | |||||||| || |||||||| Sbjct 88198 TCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCAT 88244 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||||||||||| ||||| ||||| || ||||||||||| Sbjct 88246 CCTCCTCGAAGACGCAGAACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAGAA 88305 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| |||||||| |||||| | |||| ||| |||||||| || || Sbjct 88306 AGAGTCCTACCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGGGGA 88365 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | ||| | ||||| | | || || Sbjct 88366 ATTCCTTCTTTGTC-CTGAATTTTGGCTTTCACATTTTCTATGGTGTCTGAAGCTTCTAC 88424 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || ||||| || | || || || || || ||||| Sbjct 88425 TTCAAGAGTAATAGTTTTGCCTGTAAGAGTCTTCACAAAGATCTGCAT 88472 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | |||| || || ||||| |||||||||||||| Sbjct 87334 CCACCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAA 87393 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||||| |||||| | || | |||||| ||||| ||||| Sbjct 87394 AGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGA 87453 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||||| | ||| | |||||| | | || || Sbjct 87454 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGACT 87513 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || ||||| || | |||||||| || |||||||| Sbjct 87514 TCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCAT 87560 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | |||| ||||| ||||| || || ||||| || Sbjct 88474 CCTCCACGAAGACGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAA 88533 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||| |||||| |||||||||| |||||||| ||||| Sbjct 88534 AGAGTTCTACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAGGA 88593 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || || || ||| | | || | ||||||| | || ||| Sbjct 88594 ATGCCTTCTTTATCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTACC 88653 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | ||||| || || |||||||| Sbjct 88654 TCAAGGGTGATGGTTTTTCCAGTAAGGGTTTTCACAAAGATTTGCAT 88700 >seq6884 Length=256371 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| || || | || ||||||||||||||||| |||||| Sbjct 112530 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAA 112471 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| |||||| |||| | | ||||||||| || || Sbjct 112470 AGCGTGCGACCATCTTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG 112411 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| | |||| ||| | | || | ||| || | | |||||| Sbjct 112410 ATACCTTCCTTATC-CTGAATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCAC 112352 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || ||||| ||||| || || || ||||| Sbjct 112351 TTCCAACGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATCTGCAT 112304 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || ||||| || | || || || | || ||||| || |||||||| || ||| Sbjct 112986 CCACCACGTAACCGAAGGACCAAATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGAG 112927 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||||||||||| |||||| |||||| | |||||||| ||||| Sbjct 112926 AGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGAGGG 112867 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | || | |||||| | | ||||| Sbjct 112866 ATACCTTCCTTGTC-CTGAATTTTAGCTTTGACGTTCTCGATTGTGTCTGATGCTTCCAC 112808 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | ||||| ||||| | || || ||||| || |||||| || Sbjct 112807 TTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCATACCT 112756 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || |||||||| || | || || || |||||||| || ||||| || |||| | Sbjct 113430 CGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGACCG 113371 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 |||||||| ||||| ||||| |||||| | |||||||| |||| ||||||||||| Sbjct 113370 TCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAGTGATGCCTTCTTTA 113311 Query 139670 TCGGTGATTTTTTGTTTTA 139688 | ||| |||||| |||| Sbjct 113310 AC-CTGAATTTTTGCTTTA 113293 >seq4527 Length=1270594 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 153084 AATTCGCCCGACAATACACGTCTCAAAAACAAATTACT-GTGAAACGGTTCAAACGACTC 153142 ||||| ||||||||||||||||| | | | | |||||| ||| ||||||| | || || Sbjct 573643 AATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTG-TACGGTTCGATGGATTC 573701 Query 153143 GTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACGAATT 153202 ||| || | |||||||| |||| ||||| ||||| || | | | |||||| Sbjct 573702 GTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATCAAAAGCGAATT 573761 Query 153203 ACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGG 153262 | || ||||||||| || ||| ||||||| ||| |||||||| || || Sbjct 573762 TCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCATAAATTTGTCGG 573821 Query 153263 TATCGCATTCCACAAATCGTATTG 153286 | | ||||||||| || ||||| Sbjct 573822 TTTAACATTCCACATGTCATATTG 573845 >seq699 Length=139783 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 ||||||||||||||||||| | || | || | ||||| | ||||| |||||| || Sbjct 5965 CTTTTTGAATGTTATAATCAGAGAGAGTACGTCCA-TCTTCTAATTGTTTGCCAGCAAAG 6023 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || || ||||||||||| || || || || ||||| || ||| || ||| | | | Sbjct 6024 ATAAGTCGTTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATCTTAGCTTTCACATTT 6083 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | || || | || || ||||| | || | ||||| || || | ||||| ||| Sbjct 6084 TCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATGGTCTTACCAGTGAGGGTTTTCACG 6143 Query 139754 AATATTTGCATAGCTTATGTTTTACCT 139780 || || |||| | |||||||| || Sbjct 6144 AAAATCTGCA----TGATGTTTTATCT 6166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495997087167200