Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4527 140 5e-28 seq9256 109 8e-19 seq8255 98.7 1e-15 >seq4527 Length=1270594 Score = 140 bits (154), Expect = 5e-28 Identities = 199/280 (71%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || ||||||||| |||||| || || |||||| || || || | |||||| Sbjct 575403 TATCTTTCAGACAAATAATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAATA 575462 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || || || | ||| ||||| || ||||||||||| || |||||| ||| |||||| Sbjct 575463 CCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTTC 575522 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 ||||| || | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575523 AACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATCA 575582 Query 80554 TAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 80593 ||||| || | || | ||||| ||| || || |||| Sbjct 575583 TAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 123 bits (136), Expect = 4e-23 Identities = 197/281 (70%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 ||||| || ||||| | |||||| ||| | ||||| ||| | | ||| ||||| Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 79056 AACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGT 79113 || | ||| |||||||| |||||||| | | || |||||||| || || ||| Sbjct 573633 GACGA--TGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGT 573690 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | ||||| |||||||| || ||||| || || || ||||||||||||||||| | | Sbjct 573691 TCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATC 573750 Query 79174 AATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAA 79233 || | |||||| | |||| | |||||| ||||| | ||||||||||| Sbjct 573751 AAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCAT 573810 Query 79234 AGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | || | ||| ||||||||| | |||||||| || || Sbjct 573811 AAATTTGTCGGTTTAACATTCCACATGTCATATTGGAGGAT 573851 Score = 107 bits (118), Expect = 3e-18 Identities = 220/320 (69%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||||||| | | |||||| ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 79520 TATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTA-GTTTG 79575 ||| |||| ||||| | ||| | |||| | | |||| || | |||| |||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTTG--CAATTGTTTTAAGTTTA 574333 Query 79576 AGAAAATCAAA----TCGTCCATC-TATTA-CAAACATGTTCAACGCGACAGATGCCAGA 79629 |||||| || | || || ||||| ||||||| || | || | |||||||||| Sbjct 574334 TCAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGA 574393 Query 79630 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTA 79689 ||||| || || || || || | | | ||||| || | ||||||||| | ||| || Sbjct 574394 TTACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTG 574453 Query 79690 CACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 79749 || || || || || | | || |||||| |||| || || ||| |||||||| Sbjct 574454 CATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGC 574513 Query 79750 ATGAACGGAGTACCAGTTTC 79769 || | ||||| ||||| || Sbjct 574514 ATATAAGGAGTTCCAGTCTC 574533 Score = 100 bits (110), Expect = 4e-16 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG---GCTAATTCACAACTCGCCTCTAATGCTCCG 79356 ||||||||||||| ||| |||||| ||||||| ||||| || || || || || Sbjct 573983 TATGTTTCATAAGTGCCT---TTTTCGGCAGCTAATTTGCAACTTGCTTCCAAGGCACCA 574039 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGA 79416 ||||||| ||||||||||| || ||||||| |||| ||| ||| ||| || |||||| Sbjct 574040 TAATAAAGAGTTTCGAAAATTTTGATATTGAGTTCTTTTGCCTCTTTGCTCTCGAATGGA 574099 Query 79417 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 79476 || | | | ||| || || ||||| ||||| | || ||||| | || | ||| Sbjct 574100 TATCGCATTAATAAAAAGGCATCCGCTAAACCTTGTATTCCGATACCTAAAGATATAT-A 574158 Query 79477 CTCTTATTAGAAATTTCAGCT 79497 | ||| ||| || ||| |||| Sbjct 574159 CACTTTTTA-AATTTTTAGCT 574178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 |||||| | || || || || ||||||||||| | || |||||| |||| | |||| Sbjct 574723 TATATAGTTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGAC 574782 Query 79910 ACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 79969 ||||||| ||| | | ||| || | ||| |||| |||||||||||| || ||||| | Sbjct 574783 ACATCAAGCTCCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATA 574842 Query 79970 GAGCTATAAATAGATCTCT 79988 || | ||||| ||||| Sbjct 574843 GACCATAAAATAAGTCTCT 574861 >seq9256 Length=299688 Score = 109 bits (120), Expect = 8e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 ||| | |||| | |||| | |||| ||| |||| ||||||||| || ||||| || Sbjct 296541 CCTTTATATGATACATATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCA 296600 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 || ||||| | || || ||||| | ||||||| | | |||||| |||| |||||| Sbjct 296601 CCATAATAGAGAGTCTCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAAT 296660 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 ||||| | | | ||||| || |||||||||||||| ||||||||||| Sbjct 296661 GGATATCTCATTAAGATAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Score = 107 bits (118), Expect = 3e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 80678 CACTAAATAGt-ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAA 80736 ||||||| ||| |||||||| || || || ||||| |||| ||| ||||| || |||||| Sbjct 298332 CACTAAA-AGTCTTTTTTGTCTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAA 298390 Query 80737 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 80796 || |||||||||||||| || | | | | ||||| ||||| | ||||| ||||| Sbjct 298391 ATCGCATAATCTGGATGCTGATTGATCATACTTGCTGCAATTTCAGATGCCAAGTTGTCC 298450 Query 80797 AATTCTACCGTTGTTACTCCA 80817 ||||| || |||||||| ||| Sbjct 298451 AATTCAACTGTTGTTACGCCA 298471 >seq8255 Length=582279 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| ||||||||||| || ||||| || || ||||| |||||||| | || || Sbjct 398038 ATACATTTCAGAATGAATGTTCTCTATGGCAATTTGGAATCCATAGAAACAACGTGCTTC 397979 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | ||| | |||||| || |||| ||| | ||| ||||| || ||||| ||| Sbjct 397978 AGCAATTTTTACTTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCAGA 397919 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT 50413 || ||||| || ||||| ||||| ||||| | | |||||| Sbjct 397918 AGCAGCAAAGAATGCCAAGACATGAGAGATAAAGTATCTTTCGT 397875 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 49764 TTTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCAT 49823 ||||| |||||| ||| | | |||||||||||| || ||||| || || | ||| Sbjct 398864 TTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCACAT 398805 Query 49824 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 49883 | | ||||||||||||||| | || ||||| | || || | |||||| ||||| Sbjct 398804 GAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTGTTC 398745 Query 49884 AATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA 49943 ||| ||| ||||| ||||||| ||| | || ||| ||| || | | Sbjct 398744 AATTTCTACAGCATCCATTATAATTGATTTCACACGTTCAAAGGATGGTTTTTGTACAAT 398685 Query 49944 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 ||||||||||| |||||||| |||||||| || | |||| Sbjct 398684 GTGTTTAAACATTAAACATGCAAAATCGCAATGTAATCCCT 398644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718171914517240