Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq8255 104 2e-17 >seq8255 Length=582279 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 || ||| ||||| | | ||||| ||||| |||||||| ||| |||||||||||| || Sbjct 398083 TTACTTTTCTTTTGGATCGGAAATATATGTTTCAATAAGCAAGGAATACATTTCAGAATG 398024 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||| ||||| || || || || ||||| ||||| | ||||| | || ||| || Sbjct 398023 AATGTTCTCTATGGCAATTTGGAATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTC 397964 Query 14028 -CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 || | ||||| || || || |||||||| || |||||| ||| ||||| |||| Sbjct 397963 TTGACT-GAATCTCTCAATCAGATTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATG 397905 Query 14087 CCAA 14090 |||| Sbjct 397904 CCAA 397901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478524244353240