Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq6884 125 5e-24 seq7770 105 5e-18 >seq6884 Length=256371 Score = 125 bits (138), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| ||| | |||||||| | |||| |||||||| | ||| ||||| ||| Sbjct 112302 CCGCCACGCAATCTGAGGACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGAC 112243 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || | |||||| || ||||||||||| ||||| || || | || Sbjct 112242 AAGGTACGTCCGTCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGA 112183 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGC-----CAACTGTGTCGCCAGCCT 43057 | ||| ||||| || ||| | |||||| || | | | | ||||| || | Sbjct 112182 ATACCCTCTTTGTC-CTG----AATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTT 112128 Query 43058 CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || | ||||| |||||||| |||| || ||||||||||| ||||| Sbjct 112127 CAACTTCGAGAGTTATGGTTTTTCCAGTTAACGTCTTCACAAAAATCTGCAT 112076 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| ||| || ||||| | |||| |||||||| | |||||||||||| Sbjct 112758 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAG 112699 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| |||| || ||||| || |||||||||| ||||||||| | || Sbjct 112698 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGA 112639 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | || || | ||| || || |||||| || Sbjct 112638 ATTCCCTCTTTGTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACT 112579 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || | ||||| |||||||| ||||| Sbjct 112578 TCCAAAGTAATAGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCAT 112532 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | |||| ||| ||||| | ||||||||||| Sbjct 112530 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAA 112471 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | ||||| || ||||| || |||| || ||||| | || Sbjct 112470 AGCGTGCGACCATCTTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG 112411 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| ||| ||||||| | ||| ||| || ||||| || Sbjct 112410 ATACCTTCCTTATC-CTGAATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCAC 112352 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | ||| || || ||||| || | |||||| ||||| || |||||| Sbjct 112351 TTCCAACGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATCTGCATT 112303 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | ||| ||||| |||||||| ||| |||| || | ||| ||||| |||||| Sbjct 114318 TCTTTCTGAATATTATAATCTGACAATGTGCGTCCGTCCTCGAGTTGCTTGCCCGCAAAA 114259 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||| ||||| | || | || ||||| || || | | ||||| | Sbjct 114258 ATCAATCTCTGCTGATCAGGAGGAATGCCCTCTTTGTCTTGAATTTTCGCCTTGACATTC 114199 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||| || ||| || || || | || |||||||| || || | |||||| || Sbjct 114198 TCGATTGTATCTGAAGCTTCTACCTCCAAAGTGATAGTTTTGCCTGTCAAAGTTTTGACG 114139 Query 43099 AAAATTTGCAT 43109 ||||| ||||| Sbjct 114138 AAAATCTGCAT 114128 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || | || ||||| | ||| || || || | |||||||| || Sbjct 114126 CCGCCGCGAAGCCTGAGGACTAAATGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAG 114067 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || || | ||||| || ||||| ||||||| ||| ||||| | || Sbjct 114066 AGTGTACGACCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGG 114007 Query 43003 ACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||||| | | | ||||| || || || Sbjct 114006 ATGCCTTCCTTGTC-CTGAATTTTTGCTTTGACATTTTCTATCGTGTCTGATGCTTCAAC 113948 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || |||||||| || || ||||| || |||||||||||||| Sbjct 113947 TTCTAATGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATTTGCAT 113900 >seq7770 Length=449423 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | || ||||| | ||| || || || | || ||||| || Sbjct 87562 CCTCCTCGAAGACGCAGAACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAA 87621 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| |||| ||||||||||| || |||||||| || || |||||||| | || Sbjct 87622 AGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGA 87681 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| || | | | |||||| ||| ||||| Sbjct 87682 ATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGACT 87741 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || || || ||||| ||||| ||||||||| Sbjct 87742 TCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87789 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 || ||||| || | || ||| |||| ||||||||||| || |||||||| || || ||| Sbjct 87382 TTATAATCCGAAAGCGTCCGTCCGTCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGT 87441 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | ||||||||| || ||| |||| || | | | |||||| Sbjct 87442 TGATCAGGAGGAATACCTTCTTTGTCCTGGATTTTGGCTTTTACGTTTTCTATTGTGTCA 87501 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||| ||||| || | || |||||||| || || || ||||| ||||| ||||||||| Sbjct 87502 GAAGCTTCGACTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 87561 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || |||| ||| | || || || || | ||| || || || Sbjct 87106 CCTCCACGAAGACGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAA 87165 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||| || |||||||| || ||||||||||| | || Sbjct 87166 AGAGTTCTACCATCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAGGA 87225 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||||| | | | || || ||| || || Sbjct 87226 ATGCCTTCTTTGTCTTGAATCTTAGCTTTGACATTCTCTATAGTATCTGAAGCTTCTACT 87285 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||||||||| || || ||||||||||| ||||||||| Sbjct 87286 TCAAGAGTGATAGTTTTTCCAGTAAGCGTTTTCACAAAGATTTGCATT 87333 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | |||||| || ||||||||||| ||||| ||||| | || | |||||||| Sbjct 87862 TCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGAGGAATTCCTTCTTTG 87921 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| |||| || | | | |||||| ||| ||||| || | || ||| Sbjct 87922 TCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACTTCAAGTGTAATA 87981 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || || || || |||||||||||||||||| Sbjct 87982 GTTTTGCCTGTGAGTGTCTTCACAAAAATTTGCATT 88017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | ||||||||| ||||||||||| ||||| ||||| | || | |||||||| Sbjct 88090 TCTTCAAGTTGTTTGCCAGCAAAAATCAAACGCTGCTGATCCGGAGGAATTCCTTCTTTG 88149 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| |||| || | | | |||||| ||| ||||| || | || ||| Sbjct 88150 TCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACTTCGAGTGTGATA 88209 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || || || ||||| ||||| ||||||||| Sbjct 88210 GTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 88245 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || |||| ||| | || || || || | ||| || || || Sbjct 88474 CCTCCACGAAGACGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAA 88533 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||| || ||||| |||| ||||| ||||| | || Sbjct 88534 AGAGTTCTACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAGGA 88593 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| ||||||| | | | |||||| ||| || || Sbjct 88594 ATGCCTTCTTTATCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTACC 88653 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || || ||||||||||| |||||||| Sbjct 88654 TCAAGGGTGATGGTTTTTCCAGTAAGGGTTTTCACAAAGATTTGCAT 88700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381319444057878