Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4527 149 8e-31 seq8255 105 9e-18 seq9256 104 3e-17 >seq4527 Length=1270594 Score = 149 bits (164), Expect = 8e-31 Identities = 201/280 (72%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || ||||||||| |||||| || || |||||| || || || | ||| || Sbjct 575403 TATCTTTCAGACAAATAATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAATA 575462 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || || || || | ||| |||||||| ||||||||||| || |||||| ||| |||||| Sbjct 575463 CCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTTC 575522 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 72636 ||||| ||| | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575523 AACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATCA 575582 Query 72637 TAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAA 72676 ||||| || | |||| ||||| ||| || || |||| Sbjct 575583 TAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 107 bits (118), Expect = 3e-18 Identities = 220/320 (69%), Gaps = 14/320 (4%) Strand=Plus/Plus Query 71543 TACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 71602 |||| |||||||| ||| | | |||||| ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 71603 TATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTTA-GTTTG 71658 ||| |||| ||||| | ||| | |||| | | |||| || | |||| |||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTTG--CAATTGTTTTAAGTTTA 574333 Query 71659 AGAAAATCAAA---TCTCCCATC--TATTA-CAAACACGTTCAAGGCAACAGATGCCAGA 71712 |||||| || | | || ||||| |||||| || | |||| |||||||||| Sbjct 574334 TCAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGA 574393 Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 ||||| || || || || || | | | ||||| |||| ||||||||| | || || Sbjct 574394 TTACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTG 574453 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 || ||||| || || | | || |||||| |||| || || ||| |||||||| Sbjct 574454 CATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGC 574513 Query 71833 ATAAACGGAGTACCAGTTTC 71852 ||| | ||||| ||||| || Sbjct 574514 ATATAAGGAGTTCCAGTCTC 574533 Score = 104 bits (114), Expect = 3e-17 Identities = 187/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 71050 TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTC 71109 |||| |||||| | ||||| || ||| | || ||||| | |||||| ||| Sbjct 573544 TGAACAGATCCAAAACTTGCAAGTATTTCATTCTGCATGTCTTCGTCCCATAAACCTCTA 573603 Query 71110 TCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA--AATTCTCCAGACAATACTC 71167 | ||||| ||| | | ||||||||| || | ||| |||||||| |||||||| | Sbjct 573604 GCAGTTAAGTCTCGCAATAAATGAGGATTGACGA--TGACGAATTCTCCCGACAATACAC 573661 Query 71168 TACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAG 71227 | || |||||||| || |||||||| | || || |||||||| || ||||| | Sbjct 573662 GTCTTACATAGATATTACTCGTGTACGGTTCGATGGATTCGTTATTTCCTAAGATTTGTG 573721 Query 71228 CAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCG-G 71286 | || || || || ||||||||||| | ||| || |||||| | || ||| ||| | Sbjct 573722 CCGTCGACGCCGTTGGCATAGGTGCAATCAAAAGCGAATTTCTTACTCCGTGT-TTCGCG 573780 Query 71287 ATTTTATCTTTTAGAGATTCCCAATTCCA 71315 ||||| ||||| | ||||||| ||| Sbjct 573781 ATTTTCTCTTTCAATTTATCCCAATCCCA 573809 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| ||||||| || || | |||| || | |||| || ||||| || || || || Sbjct 573977 CCTTCATATGTTTCATAAGTGCCTTTTTCGGCAGCTAATTTGCAACTTGCTTCCAAGGCA 574036 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 |||||||||| ||||||||||| || ||||||| |||| ||| || ||| || ||| Sbjct 574037 CCATAATAAAGAGTTTCGAAAATTTTGATATTGAGTTCTTTTGCCTCTTTGCTCTCGAAT 574096 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACC 71546 ||||| | | | ||| || || ||||| ||||| | || ||||| Sbjct 574097 GGATATCGCATTAATAAAAAGGCATCCGCTAAACCTTGTATTCCGATACC 574146 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 71933 TATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGAC 71992 |||||| | || || || || |||||| ||| | || |||||| |||||| |||| Sbjct 574723 TATATAGTTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGAGATTCATGTGGAC 574782 Query 71993 ACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAA 72052 ||||||| ||| | | ||| || || ||| |||| |||||||||||| || ||||| | Sbjct 574783 ACATCAAGCTCCAATTTTCATTATTATATACACGTTCCATAAAGAGATCTGGTATCCATA 574842 Query 72053 GAGCTATAAATAGATCTCT 72071 || | ||||| ||||| Sbjct 574843 GACCATAAAATAAGTCTCT 574861 >seq8255 Length=582279 Score = 105 bits (116), Expect = 9e-18 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||||||||||| |||||||| ||||| | || ||||| ||||||| ||| |||||| | Sbjct 397725 TACTTCTTCTATGGTCCAAAAGGATGCCACAGCTTTTTTGTACATATCCCAAATATCAGG 397666 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGA-TTTGGTGCAAGGATCGGTTCCA 42677 ||||||||| |||||||| ||||| | ||||||| || || ||||| ||||||| Sbjct 397665 ATATTGAATGGGGAAAATCACAAAACGATTTGGACCTTCCTG-AAGGAGTGGTTCCA 397610 Score = 100 bits (110), Expect = 4e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 42331 AACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATC 42388 || |||||| || || | || || ||||||||| ||||||||||| || ||||| || Sbjct 398062 AATATATGTTTCAATAAGCAAGGA--ATACATTTCAGAATGAATGTTCTCTATGGCAATT 398005 Query 42389 TGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCT 42448 || ||||| |||||||| | || || | || | ||||||| || |||| ||| Sbjct 398004 TGGAATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATC 397945 Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 | ||| || || || ||||| ||| || ||||| || ||||| ||||| ||||| Sbjct 397944 AGATTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAG 397885 Query 42509 TATTTTTCGTC 42519 ||| ||||||| Sbjct 397884 TATCTTTCGTC 397874 >seq9256 Length=299688 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 72761 CACTAAATAGt-ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGA 72819 ||||||| ||| |||||||| || || || ||||| |||| ||| ||||| || |||| | Sbjct 298332 CACTAAA-AGTCTTTTTTGTCTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAA 298390 Query 72820 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCC 72879 || |||||||||||||| || | | | | ||||| ||||| | ||||| ||||| Sbjct 298391 ATCGCATAATCTGGATGCTGATTGATCATACTTGCTGCAATTTCAGATGCCAAGTTGTCC 298450 Query 72880 AATTCTACCGTTGTTACTCCA 72900 ||||| || |||||||| ||| Sbjct 298451 AATTCAACTGTTGTTACGCCA 298471 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469 |||| ||||||||| || ||||| || |||||||| | || || ||||| | ||||| Sbjct 296574 GCTATTTCACAACTAGCTTCTAAAGCACCATAATAGAGAGTCTCAAAAATTTGAATATTG 296633 Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529 || | | ||||| |||| ||||||||||| | | | ||||| || ||||||||| Sbjct 296634 AGTTTGCGAGCTTCTTGGCTTTCAAATGGATATCTCATTAAGATAAATGCATCTGCTAAT 296693 Query 71530 CCTTGAACGCCAATACC 71546 ||||| || |||||||| Sbjct 296694 CCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671048671711160