Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq7770 138 8e-28 seq6884 125 5e-24 seq699 89.7 4e-13 >seq7770 Length=449423 Score = 138 bits (152), Expect = 8e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 |||||||| ||||| || || || ||||| || || || || ||| |||| | ||| Sbjct 86893 AAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCTGCCATCT 86952 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC- 15270 |||| ||||| ||||| | || | |||||| || ||| ||||||||||| ||||| Sbjct 86953 TCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCCTTGTCT 87012 Query 15271 ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 | ||||||| |||||| | ||||||||||| | ||| || || | |||||||| Sbjct 87013 TGGATTTTTGCT-TTTACATTCTCTATGGTATCTGAAGCTTCGACTTCAAGAGTAATGGT 87071 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||||| |||||||| |||||||| ||||| Sbjct 87072 TTTGCCTGTAAGAGTTTTCACAAAAATCTGCAT 87104 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||||||||| ||||| ||||| || ||||| ||||| || | | ||||||| Sbjct 87579 AACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAAAGCGTCCGTCCGTCTTC 87638 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| ||||| | || ||||||||||| || ||||| ||||||||||| Sbjct 87639 CAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGAATACCTTCTTTGTCCTG 87698 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||||| ||||||| || || | ||| || || | || || ||||| Sbjct 87699 GATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGACTTCGAGTGTGATAGTTTT 87758 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| |||||||| Sbjct 87759 GCCCGTGAGTGTTTTTACAAAGATTTGCAT 87788 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 88263 AACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAGAAAGAGTCCTACCATCTTC 88322 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | |||||||| || || || ||||||||||||||||| Sbjct 88323 AAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGGGGAATTCCTTCTTTGTCCTG 88382 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || ||| |||||||||| || | |||||| || | ||||| ||||| Sbjct 88383 AATTTTGGCTTTCACATTTTCTATGGTGTCTGAAGCTTCTACTTCAAGAGTAATAGTTTT 88442 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| || ||||| || ||||| Sbjct 88443 GCCTGTAAGAGTCTTCACAAAGATCTGCAT 88472 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| ||||| ||||| || ||||| ||||| || | | ||||||| Sbjct 87351 AACCAGATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAAAGCGTCCGTCCGTCTTC 87410 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 |||||||| ||||| | || ||||||||||| || ||||| ||||||||||| Sbjct 87411 CAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGAATACCTTCTTTGTCCTG 87470 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||||| ||||||| || || | ||| || || | || || ||||| Sbjct 87471 GATTTTGGCTTTTACGTTTTCTATTGTGTCAGAAGCTTCGACTTCGAGTGTGATAGTTTT 87530 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| |||||||| Sbjct 87531 GCCCGTGAGTGTTTTTACAAAGATTTGCAT 87560 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 |||||| ||||| || || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 87807 AACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAGAAAGAGTCCTACCATCTTC 87866 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | |||||| ||||| | |||||||| || || || ||||||||||||||||| Sbjct 87867 AAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGAGGAATTCCTTCTTTGTCCTG 87926 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| || || ||||||| || || | ||| || || | ||||| ||||| Sbjct 87927 GATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTTTT 87986 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || || |||||||||||||| Sbjct 87987 GCCTGTGAGTGTCTTCACAAAAATTTGCAT 88016 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || ||||| ||||| ||| | || | ||||| | |||| Sbjct 88042 TGAAGAGTGGATTCTTTCTGGATGTTATAATCAGAAAGAGTCCTACCATCTTCAAGTTGT 88101 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 |||||||| | |||||||| || || || ||||||||||||||||| |||||| Sbjct 88102 TTGCCAGCAAAAATCAAACGCTGCTGATCCGGAGGAATTCCTTCTTTGTCCTGGATTTTG 88161 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || ||||||| || || | ||| || || | || || ||||| || || Sbjct 88162 GCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGACTTCGAGTGTGATAGTTTTGCCCGTG 88221 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| |||||||| Sbjct 88222 AGTGTTTTTACAAAGATTTGCAT 88244 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | |||||| || || ||||| || || || || || ||| |||| | ||| Sbjct 87121 AAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAAGAGTTCTACCATCT 87180 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | |||||| ||||| | || ||||| ||||| || ||||| ||||||||||| Sbjct 87181 TCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAGGAATGCCTTCTTTGTCT 87240 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| | ||||| ||||| | |||||| || | || || || Sbjct 87241 TGAATCTTAGCT-TTGACATTCTCTATAGTATCTGAAGCTTCTACTTCAAGAGTGATAGT 87299 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || ||||| ||||| |||||||| Sbjct 87300 TTTTCCAGTAAGCGTTTTCACAAAGATTTGCAT 87332 >seq6884 Length=256371 Score = 125 bits (138), Expect = 5e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || |||||||||||| || ||||| || ||||| || ||||||||| || | | | Sbjct 112747 TCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAGAGCGTGCGTCC 112688 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||| || | || ||||||||| | ||||| | ||||| || |||||||| ||||| Sbjct 112687 GTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGAATTCCCTCTTT 112628 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| |||||| ||| ||| | || || ||||| | ||||| || || ||||| Sbjct 112627 GTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACTTCCAAAGTAAT 112568 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||||| ||||| |||||||| |||||| Sbjct 112567 AGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCATA 112531 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || |||||||||||| || ||||| || ||||| || |||||||| | | | | | Sbjct 113203 TCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGGCC 113144 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | |||||| ||||| | || || | ||||| || ||||| |||||||| Sbjct 113143 GTCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGAATGCCTTCTTT 113084 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || ||||||| || ||| | ||||| ||||| ||| || || || || || Sbjct 113083 ATCTTGAATTTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGAT 113024 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || ||||| || |||||||| |||||| Sbjct 113023 TGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCATA 112987 Score = 102 bits (112), Expect = 6e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || |||||||||||| || ||||| || ||||| || |||||||| || | | | Sbjct 113659 TCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGTACGTCC 113600 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| ||| || ||||| | ||||| | || || || || || |||||||| Sbjct 113599 GTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTT 113540 Query 15268 GT-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 | | || ||||||| || ||| | ||||| ||||| ||| || || || || | Sbjct 113539 ATCCTGAATTTTTGCT-TTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGA 113481 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | |||||||| || ||||| || |||||||| |||||| Sbjct 113480 TTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCATA 113443 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| | || || ||||| || ||||||||||| || | | | ||||| Sbjct 114108 ACTAAATGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAGAGTGTACGACCATCTTCA 114049 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| ||||| | ||||| | || || || || || ||||| ||||| | Sbjct 114048 AGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGA 113989 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| ||||||| || || ||| || ||||| || || ||||| Sbjct 113988 ATTTTTGCT-TTGACATTTTCTATCGTGTCTGATGCTTCAACTTCTAATGTGATAGTTTT 113930 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || ||||| || ||||||||||||||| Sbjct 113929 ACCAGTGAGAGTCTTGACAAAAATTTGCATA 113899 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || |||||||||||| || ||||| || ||||| || |||||||| || | | | Sbjct 113887 TCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGTACGTCC 113828 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| ||| || ||||| | ||||| | || || || | || | |||||||| Sbjct 113827 GTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGTAGGGAAGCCTTCTTT 113768 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || |||||| | | ||| | ||||| ||| | ||| || || || || || Sbjct 113767 ATCCTGAATTTTTGCCCTAACATTCTCTATTGTACCTGATGCTTCGACTTCCAATGTGAT 113708 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| | |||||||| |||||||| |||||| Sbjct 113707 TGTTTTACCGCTGAGAGTTTTGACAAAAATCTGCATA 113671 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || |||||||||||| || ||||| || ||||| || |||||||| | | | | | Sbjct 113431 TCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGACC 113372 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||||| | |||||| |||| | ||||| | || || || | || |||||||| Sbjct 113371 GTCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAGTGATGCCTTCTTT 113312 Query 15268 -GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAA 15326 | || ||||||| || ||| | ||||| ||||| ||| | || || || | Sbjct 113311 AACCTGAATTTTTGCT-TTAACATTCTCTATCGTATCAGATGCTTCGATTTCCAATGTGA 113253 Query 15327 TGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | |||||||| || ||||| || |||||||| |||||| Sbjct 113252 TTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCATA 113215 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | ||||| |||||||| |||||||||||| || | | | ||||| Sbjct 112513 AACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAAAGCGTGCGACCATCTTC 112454 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| ||||| | || || | ||| || || ||| || ||||| || || Sbjct 112453 AAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGGATACCTTCCTTATCCTG 112394 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| |||||| || ||| | || || ||||| || || || || || ||||| | Sbjct 112393 AATCTTTGCT-TTGACATTCTCAATTGTATCTGATGCCTCCACTTCCAACGTGATGGTCT 112335 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||||| |||||| ||||| || ||||| Sbjct 112334 TTCCTGTCAAAGTTTTGACAAAGATCTGCAT 112304 >seq699 Length=139783 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| ||||| ||||| ||| | | | |||||||||||||||||||| | | Sbjct 5965 CTTTTTGAATGTTATAATCAGAGAGAGTACGTCCATCTTCTAATTGTTTGCCAGCAAAGA 6024 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292 | | ||||| || || ||| ||||| ||||| || || || ||| || ||| || Sbjct 6025 TAAGTCGTTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATCTTAGCT-TTCACATTT 6083 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || |||||||| ||| || || | || ||||| ||||| || || ||||| || Sbjct 6084 TCAATGGTATCAGAGGCTTCGACCTCGAGAGTGATGGTCTTACCAGTGAGGGTTTTCACG 6143 Query 15353 AAAATTTGCAT 15363 ||||| ||||| Sbjct 6144 AAAATCTGCAT 6154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362131567889331