Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6884 100 2e-16 seq7770 96.9 3e-15 >seq6884 Length=256371 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || || || || |||||||| ||||| | || ||| ||||||| || || Sbjct 114330 TGTAATGTGGATTCTTTCTGAATATTATAATCTGACAATGTGCGTCCGTCCTCGAGTTGC 114271 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || |||||| |||| | |||||||||||| || | |||||||||||| ||||||| Sbjct 114270 TTGCCCGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCCTCTTTGTCTTGAATTTTC 114211 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | ||| ||||| || || || | || || ||||| ||||| Sbjct 114210 GCCTTGACATTCTCGATTGTATCTGAAGCTTCTACCTCCAAAGTGATAGTTTTGCCTGTC 114151 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 ||||||||||| ||||| ||||| Sbjct 114150 AAAGTTTTGACGAAAATCTGCAT 114128 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| || | |||| || || |||||||||||||||||||| | | Sbjct 113214 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGAC 113155 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||| || || ||||| || ||| |||| | |||||| |||||| || Sbjct 113154 AAAGTGCGGCCGTCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGA 113095 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | ||| ||||| || |||||| ||| || | | | ||||| | ||| || Sbjct 113094 ATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTCTCTATCGTATC-TGATGCTTCGAC 113036 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || |||||||| || | ||| ||||||||||| ||||| Sbjct 113035 TTCCAATGTGATTGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| || | |||| || || |||||||||||||||||||| | Sbjct 112758 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAG 112699 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || ||||||||||||| || || || |||| | |||||| ||||| || Sbjct 112698 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGA 112639 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||||| || || | | | ||||| || ||| | Sbjct 112638 ATTCCCTCTTTGTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACT 112579 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| || || ||||| || |||||||||||||| ||||| Sbjct 112578 TCCAAAGTAATAGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCAT 112532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| || | |||| || || |||||||||||||||||||| | | Sbjct 113442 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGAC 113383 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| || || ||||| | ||| | || | ||||||||||||| | Sbjct 113382 AAAGTGCGACCGTCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAGTG 113323 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | ||| ||||| | |||||| ||| || | | | ||||| | ||| || | Sbjct 113322 ATGCCTTCTTTAACCTGAATTTTTGCTTTAACATTCTCTATCGTATC-AGATGCTTCGAT 113264 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || |||||||| || | ||| ||||||||||| ||||| Sbjct 113263 TTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113216 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || ||||| |||||||| |||||||| | | || | || || Sbjct 112512 ACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAAAGCGTGCGACCATCTTCA 112453 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | || | ||| ||||||||| || | || || || || | Sbjct 112452 AGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGGATACCTTCCTTATCCTGA 112393 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | ||||| | |||| ||| | || ||||| || Sbjct 112392 ATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCACTTCCAACGTGATGGTCTTT 112333 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| |||||||||||||| || |||||| Sbjct 112332 CCTGTCAAAGTTTTGACAAAGATCTGCATT 112303 >seq7770 Length=449423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| |||||||||||||| || || | | ||| || | || || ||||||||||| Sbjct 86908 GTAGATTCCTTTTGAATATTATAGTCAGAAAGAGTTCTGCCATCTTCTAGCTGTTTACCA 86967 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || | |||||||| || | || || ||||| ||||| |||| Sbjct 86968 GCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCCTTGTCTTGGATTTTTGCTTTT 87027 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || || ||| | ||||||||||| ||||| | |||| Sbjct 87028 ACATTCTCTATGGTATCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTT 87087 Query 19025 TTGACAAAAATTTGCATT 19042 || |||||||| |||||| Sbjct 87088 TTCACAAAAATCTGCATT 87105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414518277328654