Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6884 105 4e-18 seq7770 96.9 2e-15 >seq6884 Length=256371 Score = 105 bits (116), Expect = 4e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || || || ||||| ||||| ||||||||||| | || ||| || Sbjct 112284 ACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGACAAGGTACGTCCGTCTTCA 112225 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | ||| |||||| ||| || ||||| |||||||| | || || || ||||| || | Sbjct 112224 AGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCCTGA 112165 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| ||||| | | || ||||| || || ||| || |||||||| ||| Sbjct 112164 ATCTTTGCC---TTTACGTTCTCGATGGTGTCAGAGGCTTCAACTTCGAGAGTTATGGTT 112108 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||||| || | || || || ||||| |||||| Sbjct 112107 TTTCCAGTTAACGTCTTCACAAAAATCTGCATG 112075 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || ||||||| || || || ||||| ||||||||||| |||||| || | | Sbjct 113202 CGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGACAAAGTGCGGCCG 113143 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | ||| |||||| ||| ||||| | || || |||| || ||||||||||| Sbjct 113142 TCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGAATGCCTTCTTTA 113083 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||||| || | || || |||| || || Sbjct 113082 TCTTGAATTTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGATT 113023 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || |||||||| || || ||||| ||||| Sbjct 113022 GTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || ||||||| || || || ||||| ||||||||||| || || | || | Sbjct 113658 CGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGATAAGGTACGTCCG 113599 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || |||||||||| ||| || || | ||||| |||| || ||||||||||| Sbjct 113598 TCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTA 113539 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||||| || | || || |||| || || Sbjct 113538 TCCTGAATTTTTGCTTTAACATTCTCTATCGTATCTGATGCTTCGACTTCCAATGTGATT 113479 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || ||||| || || ||||| ||||| Sbjct 113478 GTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 >seq7770 Length=449423 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| ||| | ||| || ||||| || || || ||||| || | | || | Sbjct 87346 CGCAGAACCAGATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAAAGCGTCCGTCCG 87405 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| |||||| ||| ||||||||||| || || | || || |||||||| Sbjct 87406 TCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGAATACCTTCTTTG 87465 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || |||||| ||| || ||||| | || || || || || Sbjct 87466 TCCTGGATTTTGGC---TTTTACGTTTTCTATTGTGTCAGAAGCTTCGACTTCGAGTGTG 87522 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||| || |||||||| || |||||||| Sbjct 87523 ATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCAT 87560 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| || ||||| | ||| || ||||| || || || ||||| || | | || | Sbjct 87574 CGCAGAACTAAATGAAGTGTGGATTCTTTCTGAATGTTATAATCCGAAAGCGTCCGTCCG 87633 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| |||||| ||| ||||||||||| || || | || || |||||||| Sbjct 87634 TCTTCCAATTGTTTTCCAGCAAAAATTAAACGTTGTTGATCAGGAGGAATACCTTCTTTG 87693 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || |||||| ||| || ||||| | || || || || || Sbjct 87694 TCCTGGATTTTGGC---TTTTACGTTTTCTATTGTGTCAGAAGCTTCGACTTCGAGTGTG 87750 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||| || |||||||| || |||||||| Sbjct 87751 ATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCAT 87788 Score = 91.5 bits (100), Expect = 9e-14 Identities = 152/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| ||| | ||| || ||||| || ||||| || ||||| | ||||| Sbjct 87118 CGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAA----GAGTTCT 87173 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||| ||| |||||| ||| |||||||| || || || | || |||||||| Sbjct 87174 ACCATCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAGGAATGCCTTC 87233 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || |||| ||| || | | || || || | || || || ||||| Sbjct 87234 TTTGTCTTGAATCTTAGCTTTGACATTCTCTATAGTATCTGAAGCTTCTACTTCAAGAGT 87293 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || |||||||| ||||| ||||| || || |||||||| Sbjct 87294 GATAGTTTTTCCAGTAAGCGTTTTCACAAAGATTTGCAT 87332 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/220 (69%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| ||| | ||| || ||||| || ||||| || ||||| | ||||| Sbjct 88486 CGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAGAAA----GAGTTCT 88541 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || |||| ||| |||||| ||| || | ||| ||||| || | || |||||||| Sbjct 88542 ACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTC 88601 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || ||| ||| || | | || |||||| | || || || || || Sbjct 88602 TTTATCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTACCTCAAGGGT 88661 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||||||| ||||| ||||| || || ||||||||| Sbjct 88662 GATGGTTTTTCCAGTAAGGGTTTTCACAAAGATTTGCATG 88701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318735675864318