Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6884 114 9e-21 >seq6884 Length=256371 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| | | || ||| || ||||| || ||| || ||||||||||| ||||| Sbjct 113671 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113612 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| | || || ||| ||||| ||||| ||||| | ||||| ||| |||| Sbjct 113611 TAAGGTACGTCCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGG 113552 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||||| ||| || | | | ||||||| | || || Sbjct 113551 GATGCCTTCTTTATCCTGAATTTTTGCTTTAACATTCTCTATCGTATCTGATGCTTCGAC 113492 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| | |||||| ||||| || ||||| Sbjct 113491 TTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 |||||| | | || ||| || ||||| || ||| || ||||||||||| ||||| | Sbjct 113215 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113156 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || | || || | ||||||||| ||||| || || | || || ||| ||| Sbjct 113155 CAAAGTGCGGC-CGTCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAG 113097 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||||||| |||||| ||| || | | | ||||||| | || | Sbjct 113096 GAATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGA 113037 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || |||||||||||||| | |||||| ||||| || ||||| Sbjct 113036 CTTCCAATGTGATTGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | ||| |||||||||||| || |||||| | || |||| || Sbjct 112512 ACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAAAGCGTGCGACCATCTTCA 112453 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | |||||||| ||||| || || | |||||| ||| | || | |||||| ||||| | Sbjct 112452 AGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGGATACCTTCCTTATCCTGA 112393 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| |||||| | ||| ||||||| | |||||| || | ||| || || || Sbjct 112392 ATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCACTTCCAACGTGATGGTCTTT 112333 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || ||||| || ||||| || ||||| Sbjct 112332 CCTGTCAAAGTTTTGACAAAGATCTGCAT 112304 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | |||||| | |||||||| || ||| || ||||| ||||||||||| Sbjct 112302 CCGCCACGCAATCTGAGGACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGAC 112243 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| | || || | ||||||||| ||||| ||||| || |||||||| | || Sbjct 112242 AAGGTACGTCCGTCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGA 112183 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| ||||| || ||| ||| || || | | | || || | | || || Sbjct 112182 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAACT 112123 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || || ||||| || ||||| ||||||||||| || |||||| Sbjct 112122 TCGAGAGTTATGGTTTTTCCAGTTAACGTCTTCACAAAAATCTGCATG 112075 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 |||||| | | || ||| || ||||| || ||| || ||||||||||| ||||| | Sbjct 113443 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113384 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || || || | || || | ||||||| | ||||| ||||| | ||||| ||| ||| Sbjct 113383 CAAAGTG-CGACCGTCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAG 113325 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | ||||||||| | ||||||| ||| || | | | ||||| | | || | Sbjct 113324 TGATGCCTTCTTTAACCTGAATTTTTGCTTTAACATTCTCTATCGTATCAGATGCTTCGA 113265 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| | |||||| ||||| || ||||| Sbjct 113264 TTTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113216 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| | | || ||| || ||||| || ||| || ||||||||||| ||||| Sbjct 113899 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113840 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| | || || ||| ||||| ||||| ||||| | ||||| ||| ||| Sbjct 113839 TAAGGTACGTCCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGTAGG 113780 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||||||| | || | | | ||| ||| | || || Sbjct 113779 GAAGCCTTCTTTATCCTGAATTTTTGCCCTAACATTCTCTATTGTACCTGATGCTTCGAC 113720 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||| | | ||| || ||||| || ||||| Sbjct 113719 TTCCAATGTGATTGTTTTACCGCTGAGAGTTTTGACAAAAATCTGCAT 113672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354730941313068