Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq7770 109 5e-19 >seq7770 Length=449423 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | | ||| |||| ||| |||||||||||||| || || || || || Sbjct 87104 TTCCTCCACGAAGACGCAAGACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAG 87163 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| || |||||||| |||||| || ||| |||| | | ||||||||| | Sbjct 87164 AAAGAGTTCTACCATCTTCCAGTTGTTTTCCAGCAAAAATTAAACGCTGTTGATCAGGAG 87223 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||||||| ||| || ||| || | | | || ||| || ||| Sbjct 87224 GAATGCCTTCTTTGTCTTGAATCTTAGCTTTGACATTCTCTATAGTATCTGAAGCTTCTA 87283 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | || || ||||| || || | |||||| ||||| ||||||||| Sbjct 87284 CTTCAAGAGTGATAGTTTTTCCAGTAAGCGTTTTCACAAAGATTTGCATT 87333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || || || || |||||||||||||| || ||||| ||||| Sbjct 87788 TTCCTCCTCGAAGACGCAGAACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAG 87847 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || |||||| | |||||| || ||| |||| | | ||| ||||| | Sbjct 87848 AAAGAGTCCTACCATCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGAG 87907 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| ||||| |||||| | | | | || || ||| Sbjct 87908 GAATTCCTTCTTTGTCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGA 87967 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| |||||||| || | || || ||||||||||||||| Sbjct 87968 CTTCAAGTGTAATAGTTTTGCCTGTGAGTGTCTTCACAAAAATTTGCATT 88017 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || | | ||| |||| ||| |||||||||||||| || || || || || Sbjct 88472 TTCCTCCACGAAGACGCAAAACCAGATGAAGTGTAGATTCTTTCTGGATATTATAGTCAG 88531 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| || |||||||| |||||| || ||| | || || | ||| ||||| | Sbjct 88532 AAAGAGTTCTACCATCTTCCAGTTGTTTTCCAGCAAAGATCAGACGCTGCTGATCAGGAG 88591 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||| || || || ||| || | | | || ||| || ||| Sbjct 88592 GAATGCCTTCTTTATCTTGTATCTTGGCTTTGACATTCTCTATAGTGTCGGAAGCTTCTA 88651 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| |||||||| || || | ||||| ||||| |||||||| Sbjct 88652 CCTCAAGGGTGATGGTTTTTCCAGTAAGGGTTTTCACAAAGATTTGCAT 88700 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || || || || |||||||||||||| || ||||| ||||| Sbjct 88244 TTCCTCCTCGAAGACGCAGAACTAAGTGAAGTGTAGATTCTTTCTGGATGTTATAATCAG 88303 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || |||||| | ||||| || ||| |||| | | ||| ||||| || Sbjct 88304 AAAGAGTCCTACCATCTTCAAGCTGTTTTCCAGCAAAAATCAAACGCTGCTGATCCGGGG 88363 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| |||||| |||||| | | | | || || ||| Sbjct 88364 GAATTCCTTCTTTGTCCTGAATTTTGGCTTTCACATTTTCTATGGTGTCTGAAGCTTCTA 88423 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| |||||||| || | || || ||||| || |||||| Sbjct 88424 CTTCAAGAGTAATAGTTTTGCCTGTAAGAGTCTTCACAAAGATCTGCATT 88473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | ||| || || || ||||||||||| ||||| || || || || Sbjct 86878 CCTCCACGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGAA 86937 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| | ||||| || ||| |||| || | || |||||| || Sbjct 86938 AGAGTTCTGCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAGGA 86997 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| |||||| ||| || | | | | ||| || ||| | Sbjct 86998 ATTCCTTCCTTGTCTTGGATTTTTGCTTTTACATTCTCTATGGTATCTGAAGCTTCGACT 87057 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | |||||||||||||| || | ||||| |||||||| |||||| Sbjct 87058 TCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAAATCTGCATT 87105 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || || || |||||||| || ||||| ||||| Sbjct 88016 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGAGTGGATTCTTTCTGGATGTTATAATCAG 88075 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| || |||||| | ||||||||| ||| |||| | | ||| ||||| | Sbjct 88076 AAAGAGTCCTACCATCTTCAAGTTGTTTGCCAGCAAAAATCAAACGCTGCTGATCCGGAG 88135 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||||||||| ||||| |||||| | | | | || || ||| Sbjct 88136 GAATTCCTTCTTTGTCCTGGATTTTGGCTTTCACGTTTTCTATTGTGTCAGAAGCTTCGA 88195 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | || || |||||||| || | ||||| ||||| ||||||||| Sbjct 88196 CTTCGAGTGTGATAGTTTTGCCCGTGAGTGTTTTTACAAAGATTTGCATT 88245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419532017858271