Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6884 107 2e-18 seq7770 100 2e-16 >seq6884 Length=256371 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| |||||||| || ||| ||||||||||| |||||||| | Sbjct 113671 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113612 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || |||| || | ||||| || | | || || | |||||||||| || Sbjct 113611 TAAGGTACGTCCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGG 113552 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGAT-AGACGCTATGGTATCGGTAGACTCCG 48677 | | ||| || ||| |||||| ||||| | | | |||| ||||| | | || || Sbjct 113551 GATGCCTTCTTTATCCTGAATTTT-TGCTTTAACATTCTCTATCGTATCTGATG-CTTCG 113494 Query 48678 TCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | | ||| || ||||||||||||||||| || |||||||||||||| Sbjct 113493 ACTTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| |||||||| || ||| ||||||||||| |||||||| | Sbjct 113215 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113156 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| || || || || || | ||||||| | ||| |||||| || Sbjct 113155 CAAAGTGCGGCCGTCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGG 113096 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| || || |||||| || | | | |||| ||||| | | || || Sbjct 113095 AATGCCTTCTTTATCTTGAATTTTGGCTTTAACATTCTCTATCGTATCTG-ATGCTTCGA 113037 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | ||| || ||||||||||| ||||| || |||||||||||||| Sbjct 113036 CTTCCAATGTGATTGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| |||||||| || ||| ||||||||||| |||||||| | Sbjct 113443 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113384 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| || || || || | | | || || | |||||||||| | Sbjct 113383 CAAAGTGCGACCGTCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAGT 113324 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGAT-AGACGCTATGGTATCGGTAGACTCCG 48677 | | ||| || || |||||| ||||| | | | |||| ||||| | | || Sbjct 113323 GATGCCTTCTTTAACCTGAATTTT-TGCTTTAACATTCTCTATCGTATCAGATGCTTCGA 113265 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | ||| || ||||||||||||||||| || |||||||||||||| Sbjct 113264 TTTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113216 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| |||||||| || ||| ||||||||||| |||||||| | Sbjct 113899 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGA 113840 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || |||| || | ||||| || | | || || | |||||||||| || Sbjct 113839 TAAGGTACGTCCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGTAGG 113780 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| || ||| |||||| | | | | | |||| ||| | | | || || Sbjct 113779 GAAGCCTTCTTTATCCTGAATTTTTGCCCTAACATTCTCTATTGTACCTG-ATGCTTCGA 113721 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | ||| || ||||||||| |||||||||| |||||||||||||| Sbjct 113720 CTTCCAATGTGATTGTTTTACCGCTGAGAGTTTTGACAAAAATCTGCAT 113672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| || | || |||||||| ||| |||||||| || || ||||||| | Sbjct 112302 CCGCCACGCAATCTGAGGACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGAC 112243 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||| || || || || || | |||| ||||||||||| || || Sbjct 112242 AAGGTACGTCCGTCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGA 112183 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || || |||||| ||| || ||| | | | ||||| || | || || | | Sbjct 112182 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACGTTCTCGATGGTGTCAG-AGGCTTCAAC 112124 Query 48680 -TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 |||| ||||||||||| || || | || ||||||||||||||||| ||| Sbjct 112123 TTCGAGAGTTATGGTTTTTCCAGTTAACGTCTTCACAAAAATCTGCATGGTG 112072 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| |||||||| || ||| ||||||||||| |||||||| | Sbjct 112759 ACCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGA 112700 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||||||||||||||| || || |||| || | ||| ||||| || Sbjct 112699 GAGCGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGG 112640 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || ||||| ||||| ||| | | | | || ||||| | || ||| Sbjct 112639 AATTCCCTCTTTGTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTAC 112580 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || || | ||||| |||||||||||||| Sbjct 112579 TTCCAAAGTAATAGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCAT 112532 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| | |||||||| | || || || |||||||||||||||| Sbjct 114127 ACCGCCGCGAAGCCTGAGGACTAAATGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGA 114068 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || | || || ||||| || || | | || || | |||||||||| || Sbjct 114067 GAGTGTACGACCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGG 114008 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| |||||| ||| |||| | |||| || || | | || Sbjct 114007 GATGCCTTCCTTGTCCTGAATTTT-TGCTTTGACATTTTCTATCGTGTCTGATGCTTCAA 113949 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| || |||||||| |||||||| || |||||||| ||||| Sbjct 113948 CTTCTAATGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATTTGCAT 113900 >seq7770 Length=449423 Score = 100 bits (110), Expect = 2e-16 Identities = 172/244 (70%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 48485 CAAAGACAGTCAAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGA 48544 |||||||| || ||||| || | | || ||||| |||||||| ||||||||| Sbjct 86866 CAAAGACACTCG---CCTCCACGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGA 86922 Query 48545 ATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGC 48604 || || || |||| | || | || || ||||| ||||| | |||| | ||| Sbjct 86923 ATATTATAGTCAGAAAGAGTTCTGCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGT 86982 Query 48605 TGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGT 48663 |||||||| || | | ||||||||| ||||| ||| || | | | ||||||| Sbjct 86983 TGCTGATCGGGAGGAATTCCTTCCTTGTCTTGGATTTT-TGCTTTTACATTCTCTATGGT 87041 Query 48664 ATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCT 48722 ||| | || || || | || | || |||||||| || || ||||||||||||||||||| Sbjct 87042 ATCTGAAG-CTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAAATCT 87100 Query 48723 GCAT 48726 |||| Sbjct 87101 GCAT 87104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421195799016791