Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq10641 107 2e-18 seq10315 105 8e-18 >seq10641 Length=139898 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 7175 TATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTT 7234 |||| | ||| ||||| ||||||||||| || ||||| | ||| || ||||||||||| | Sbjct 121385 TATACTCAGCACCAAAGTGTCTCCATTGGAATCCATAGACAGGTCCCAAATCACCTTCCT 121326 Query 7235 CACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATAT 7294 | | || | || || | || ||| | ||| |||| |||||||||||| Sbjct 121325 CTCTATCTGTGAACCCGCAAGAATCCAAAAAGGCACGTGAGCCATTTTCATCCCAAATAT 121266 Query 7295 GTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTT 7354 | ||| || | ||| || | | |||||||| ||||| || | ||||| | | || Sbjct 121265 GAACACCCTTATCTGACAATTCTTTGGAATTTGTCGATCCCTTGATAAACCACAGTAATT 121206 Query 7355 CTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 |||| |||| | | ||||| || | |||||| || || ||||| ||||| Sbjct 121205 CTTCAACTACTGCTCGCCAGAATACTCTTTTGGTTGTCAATAATGGGAA 121157 >seq10315 Length=458173 Score = 105 bits (116), Expect = 8e-18 Identities = 202/295 (68%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 164408 AAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTT 164467 ||||||| | ||||| ||||| || || | ||||||||| |||||||||| | Sbjct 443937 AAATGGGTATTGGTGGTTTAGATAAGGAGTTCAGTGCCATTTTCAGAAGAGCATTTGCAT 443878 Query 164468 CTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTT 164527 || | |||| | || || | | |||| || || |||||| |||||||||||| Sbjct 443877 CTCGCGTCTTTCCAACGGAGATTGTCACTCAATTGGGTTGCAAACATGTAAAAGGAATTT 443818 Query 164528 TATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTT 164587 || | |||| || |||||| || |||||||||||||||||| || | | | Sbjct 443817 TACTGTATGGGCCACCTGGTACAGGAAAAACATTAATGGCTCGACAAATAG-GAACTATG 443759 Query 164588 TTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAG 164644 |||||| | || || || ||||| ||||| || || | ||| | |||||||| | Sbjct 443758 TTAAATGCAAGAGAACC--AAAGATTGTAAATGGCCCACAAATTTTGGATAAATATGTTG 443701 Query 164645 GTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAA 164699 | || |||||||| | |||| |||||| || || ||||| ||| |||| Sbjct 443700 GAGAAAGTGAAGCTAACATCAGAAGATTGTTTGCTGATGCAGAAGAGGAAGAAAA 443646 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 ||||||| |||||||||||||| | ||| | || || ||||| || ||| ||||||| Sbjct 442727 TTCATGACACAGTGGTTAATCAGCTACTTGCAAAGATTGATGGCGTTGAACAATTAAATA 442668 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 | ||| | || | ||||||||||| || || | || || || || || ||| ||| Sbjct 442667 ACATTCTTGTTATTGGTATGACCAATAGAAGAGACATGATCGACGAAGCCTTGTTAAGAC 442608 Query 164903 CTGGTCGATTAGAATTGAAAATAGA 164927 |||| ||||| || | ||| |||| Sbjct 442607 CTGGCCGATTGGAGGTAAAATTAGA 442583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595791624315600