Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8819 118 6e-22 seq6075 118 6e-22 seq4535 118 6e-22 >seq8819 Length=39818 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| |||||| ||| ||||||||||| |||||||||| ||||||||||||||||| Sbjct 2721 TAACAAAAAACAAAAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 2780 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 2781 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 2813 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| |||||||||| |||||||||| ||||||||||||||||||| | Sbjct 2268 AACAAAAAAT----TTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCCC 2323 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 2324 GACGCTCTAACCAACTGAGCTAATGGGCC 2352 >seq6075 Length=246786 Score = 118 bits (130), Expect = 6e-22 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 245407 ATAAAAAA--AAGTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 245464 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 245465 ACGCTCTAACCAACTGAGCTAATGGGCC 245492 >seq4535 Length=290561 Score = 118 bits (130), Expect = 6e-22 Identities = 84/96 (88%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||||| || ||||||||| |||||||||| ||||||||||||||||| Sbjct 137727 AATTAAAAAAAAA--AAGATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTA 137670 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||| |||||||||||||||||||| || Sbjct 137669 GCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 137634 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261456809903116