Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8595 183 5e-42 seq9297 176 7e-40 seq1333 172 9e-39 >seq8595 Length=896427 Score = 183 bits (202), Expect = 5e-42 Identities = 184/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||||| |||||||||||||| || |||||||| || || Sbjct 854720 GCGAAGAGACATCGCAAAGTACTTCGCGATAACATCCAAGGCATTACCAAGCCGGCCATT 854779 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || ||||||||| | ||||||||| | || ||||||| Sbjct 854780 CGTCGTCTCGCACGTCGTGGCGGCGTCAAGCGTATTTCTGGATTGATTTACGAAGAGACG 854839 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | |||||| ||| ||||| | ||| || | ||||||||| Sbjct 854840 CGTGGTGTACTGAAAGTATTCCTCGAGAATGTTATTCGTGACGCGGTTACTTATACCGAG 854899 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||| | |||||||| || | ||||| ||||||| || ||||| |||||||| Sbjct 854900 CATGCTAAGAGGAAGACTGTGACTGCTATGGACGTCGTCTACGCCTTGAAGCGTCAAGG 854958 >seq9297 Length=344051 Score = 176 bits (194), Expect = 7e-40 Identities = 187/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||||||||| || || ||||||||||| || ||||| Sbjct 255570 TCTTCGTGATAACATCCAGGGTATCACCAAGCCGGCCATTCGTCGTCTGGCGCGACGTGG 255629 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| | || || ||| | || ||||| | ||| | ||| |||||| | || Sbjct 255630 CGGTGTAAAGCGTATTTCCGGCTTGATTTACGAAGAAACTCGCGGTGTGTTGAAGGTGTT 255689 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| | | ||| |||| |||||| || |||||| || ||||| || | ||||| || Sbjct 255690 CCTCGAAAACGTCATCCGCGATGCTGTCACCTATACTGAACACGCCAAGAGGAAGACAGT 255749 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| |||| || || ||||||| |||||| | | | || ||||| || Sbjct 255750 AACTGCCATGGATGTCGTATACGCCCTGAAACGCCAAGGCAGAACTCTGTACGGTTTCGG 255809 Query 16693 AAGTTAA 16699 ||||| Sbjct 255810 CGGTTAA 255816 >seq1333 Length=2663483 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || ||| | | | |||| || ||||||||||| || ||||||||||||||||| Sbjct 152663 GCTAAACGGCATAGGA-AGGTCTTGCGTGATAACATCCAGGGTATCACCAAGCCAGCTAT 152721 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| | ||||| || |||||||| | ||||| ||| | || ||||||| Sbjct 152722 ACGTCGTTTGGCGAGACGTGGCGGTGTCAAGCGCATTTCTGGCTTGATATACGAAGAGAC 152781 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| ||||| ||||||| | | ||||||| |||||| | |||||||| Sbjct 152782 GAGAGGTGTCTTGAAAGTCTTCCTGGAAAATGTTATCCGCGATGCTGTAACTTATACCGA 152841 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| || ||| | ||||| | |||||||| |||||||| ||||| Sbjct 152842 GCATGCCAAGAGGAAGACCGTAACCGCTATGGACGTGGTCTATGCCTTGAAACGGCAAGG 152901 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||||||| |||||| Sbjct 152902 AAGAACCTTATATGGTTTTGGTGGTTAAT 152930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065333713163