Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_006641.1 Length=15959 Score E Sequences producing significant alignments: (Bits) Value seq5696 167 2e-37 seq1217 113 5e-21 seq5474 107 2e-19 seq9554 102 8e-18 >seq5696 Length=73880 Score = 167 bits (184), Expect = 2e-37 Identities = 363/531 (68%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 413 CCATGGTACCGCCGTAAGGCATTTCTTCGCGGGGGGAGGAATTAGCTGCCGCTCTTCCTT 472 || ||| |||||||| ||||||| |||||||| | ||||| |||| | |||||||||| Sbjct 65940 CCGTGGGACCGCCGTTAGGCATTACTTCGCGGAGAGAGGATATAGCCGTAGCTCTTCCTT 65881 Query 473 CTGGTGGC-----TAAGATGTTATTTCTTCCTTCTAGTTTCTGTCATTCGCTCTTTTCTT 527 | | | | | | | || |||| || | | |||| ||| ||||| | | | | Sbjct 65880 CAGTTAGTCGGAGTCATAGCTTCTTTCCTCTTAGTTGTTTATGTTCTTCGCGCGCTCCCT 65821 Query 528 CTCAATGGATTGCAACTCGGTAAGCACTTTTGTAGCAAAAGTGCTTGTGGCGTTCCAGGC 587 || | | || | || || ||||| || || || ||| | || || | ||| || Sbjct 65820 TTCTACAGGATGAAGTTCTTGGAGGACTTTCGTCGCGAATGTGTTCGTTGCCTCCCAAGC 65761 Query 588 AGCTTCTGATGACAGCATTGCTGCTACTATTATCTCTGGTTGGATTTTCCTCTTC-AGGA 646 || ||||||| ||||| ||| ||| ||| || |||| || ||||| ||| Sbjct 65760 TGCCACTGATGAGAGCATAGCTTTCGCTAAATTCTAAGGCAGGATCTTT-TCTTCGAGGG 65702 Query 647 TATTCTCC-AGCTCATCCCGATGTGGGTAAAAACGTGAGCACTCAAAGAAAACGTGCTCT 705 | ||||| | | | | | | | || || | |||| || || ||||||||| Sbjct 65701 CAATCTCCCATGTACTGCGGTACTCACTGAAG-CGAGGACACTTGAAAAACACGTGCTCT 65643 Query 706 GCATCTTCAT-TGA-CTCCTGGGCAGGATGGGCACTCTGG-GGAATTATCATGCTTGGAG 762 |||||||| | | |||||||||||| | ||| ||| | ||||| ||||| ||| | Sbjct 65642 GCATCTTCTCCTCATCTCCTGGGCAGGTCGAGCA-TCTCGAGGAATCTTCATGTTTGAAT 65584 Query 763 CGGTGGAGATACGCCCGGAAACAGCCGTGTCCTGATAACATCTGTGTAAGATAATAGTTG 822 | ||||| |||||||| || || ||||||||||||||||| || || ||||||||| Sbjct 65583 TTATAAAGATATGCCCGGAAGCACCCATGTCCTGATAACATCTGCGTGAGGTAATAGTTG 65524 Query 823 ACCTCACCGTGACTCCGGTTTAGCCAAACGTTGATCCTTGGTATGAGACGATGCGTCCAT 882 |||| | |||| | ||||| ||||| |||| | | ||| || || ||||| |||||| Sbjct 65523 ACCTTCCTGTGATTTCGGTTCAGCCAGACGTCTACCTGTGGGATCAGGCGATGAGTCCAT 65464 Query 883 CTACCATTCACTGTGGCATCCCACTGTAGTTGCCATCGACTTATGCTCCTC 933 || || || |||||||||| || |||||||| | || ||| ||| Sbjct 65463 CTCCC--TC---TAGGCATCCCACAATAACTGCCATCGGCGTAGGCTGCTC 65418 >seq1217 Length=10806 Score = 113 bits (124), Expect = 5e-21 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 675 AAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGG 734 |||||| | ||| | |||||| |||| || ||||| |||| |||||| ||| ||| Sbjct 9811 AAAACGCGGGCAGTAAAAGAATGCGTGTTCAGCATCCTCATCAACTCCTTCGCAAACTGG 9752 Query 735 GCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCC 794 ||| || |||| | |||| || | | || |||||||||||||||||||||||| || Sbjct 9751 GCAGTCCGGGGCCTCCTCATAGTTAAACCTGTAGAGATACGCCCGGAAACAGCCGTGACC 9692 Query 795 TGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTT 854 || | || ||| || ||||| || |||| || |||||| ||||| | |||| || Sbjct 9691 CGACAGCACCTGCGTGAGATAGTAATTGAGTTCCCCGTGAGAACGGTTCACCCAAGTGTC 9632 Query 855 GATCCTTGGTATGAGACGATGCGTCCA 881 | | || || || || |||||||| Sbjct 9631 CACCTGCGGGATTAGCCGGTGCGTCCA 9605 >seq5474 Length=156904 Score = 107 bits (118), Expect = 2e-19 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 675 AAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGG 734 |||||| | ||| | |||||| |||| || ||||| | || |||||| ||| ||| Sbjct 137228 AAAACGCGGGCAGTAAAAGAATGCGTGTTCAGCATCCTTATCAACTCCTTCGCAAACTGG 137169 Query 735 GCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAGCCGTGTCC 794 ||| || |||| | |||| || | | || |||||||||||||||||||||||| || Sbjct 137168 GCAATCCGGGGCCTCCTCATAGTTAAACCTGTAGAGATACGCCCGGAAACAGCCGTGACC 137109 Query 795 TGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGTT 854 || | || ||| || ||||| || |||| || |||||| ||||| | |||| || Sbjct 137108 CGACAGCACCTGCGTGAGATAGTAATTGAGTTCCCCGTGAGAACGGTTCACCCAAGTGTC 137049 Query 855 GATCCTTGGTATGAGACGATGCGTCCA 881 | | || || || || |||||||| Sbjct 137048 CACCTGCGGGATTAGCCGGTGCGTCCA 137022 >seq9554 Length=624 Score = 102 bits (112), Expect = 8e-18 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 675 AAAACGTGAGCACTCAAAGAAAACGTGCTCTGCATCTTCATTGACTCCTGGGCAGGATGG 734 |||||| | ||| | |||||| |||| || ||||| | || |||||| ||| ||| Sbjct 286 AAAACGCGGGCAGTAAAAGAATGCGTGTTCAGCATCCTTATCAACTCCTTCGCAAACTGG 345 Query 735 GCACTCTGGGGAATTATCATGCTTGGAGCGGTGGAGATACGCCCGGAAACAG-CCGTGTC 793 ||| || |||| | |||| || | | || ||||||||||||||||||| |||| | Sbjct 346 GCAATCCGGGGCCTCCTCATAGTTAAACCTGTAGAGATACGCCCGGAAACAGCCCGTAAC 405 Query 794 CTGATAACATCTGTGTAAGATAATAGTTGACCTCACCGTGACTCCGGTTTAGCCAAACGT 853 | || | || ||| || ||||| || |||| || |||||| ||||| | |||| || Sbjct 406 CCGACAGCACCTGCGTGAGATAGTAATTGAGTTCCCCGTGAGAACGGTTCACCCAAGTGT 465 Query 854 TGATCCTTGGTATGAGACGATGCGTCCA 881 | | | || || || || |||||||| Sbjct 466 TCACCTGCGGGATTAGCCGGTGCGTCCA 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 50944042870826