Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4527 143 3e-29 seq8255 109 7e-19 seq9256 95.1 2e-14 >seq4527 Length=1270594 Score = 143 bits (158), Expect = 3e-29 Identities = 202/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 63651 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 || ||||||| || || |||||| || || |||||| ||| || || | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 || || || || | ||| ||||| || ||||||||||| || |||||| || ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63829 |||||| ||| | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 63830 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870 ||||| || | || | ||||| ||| || || |||| Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 62273 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62332 ||||| || || || | |||||| ||| | ||||| ||| | | ||| ||||| Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 62333 AACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62390 || | ||| |||||||| |||||||| | | || |||||||| || |||||| Sbjct 573633 GACGA--TGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGT 573690 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | || || |||||||| || ||||| || || || || || ||||||||||| | | Sbjct 573691 TCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATC 573750 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62510 || | |||||| | |||| | | |||||| ||||| | ||||||| ||| Sbjct 573751 AAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCAT 573810 Query 62511 AGATCCGACGGT 62522 | || | |||| Sbjct 573811 AAATTTGTCGGT 573822 >seq8255 Length=582279 Score = 109 bits (120), Expect = 7e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||||||| ||||||||||| || ||||| || || ||||| |||||||| | || || Sbjct 398038 ATACATTTCAGAATGAATGTTCTCTATGGCAATTTGGAATCCATAGAAACAACGTGCTTC 397979 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 | ||| | ||||||| || |||| || || ||| ||||| || ||||| ||| Sbjct 397978 AGCAATTTTTACTTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCAGA 397919 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 33758 || ||||| || ||||| ||||| ||||| ||| ||||||| Sbjct 397918 AGCAGCAAAGAATGCCAAGACATGAGAGATAAAGTATCTTTCGTC 397874 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33108 TTTTTTAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCAT 33167 ||||| |||||| ||| | | |||||||||||| |||||||| || || | ||| Sbjct 398864 TTTTTCAAATCCTAATGCGACGAACAATCTATCCGCAACGAATTCGATGTAGCTGCACAT 398805 Query 33168 CATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 33227 | | ||||||||||||||| | || ||||| | || || | |||||| ||||| Sbjct 398804 GAGTGTACAATTCATTCCTATCAATTGGACTGGTAATGCTTGTGTCAAAAATTCCTGTTC 398745 Query 33228 AATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA 33287 ||| ||| ||||| ||||||| ||| | || ||| ||| || | | Sbjct 398744 AATTTCTACAGCATCCATTATAATTGATTTCACACGTTCAAAGGATGGTTTTTGTACAAT 398685 Query 33288 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 ||||||||||| |||||||| |||||||| || | |||| Sbjct 398684 GTGTTTAAACATTAAACATGCAAAATCGCAATGTAATCCCT 398644 >seq9256 Length=299688 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 |||| |||| ||| ||||| ||||||||| || ||||| ||||| ||||| | || Sbjct 296556 TATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCACCATAATAGAGAGTC 296615 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62705 || || || | |||| || | | ||||| |||| ||||||||||| | | | Sbjct 296616 TCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAATGGATATCTCATTAAG 296675 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 ||||| || || ||||||||||| ||||||||||| Sbjct 296676 ATAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622863172209560