Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6884 120 3e-22 seq7770 95.1 1e-14 >seq6884 Length=256371 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || || || || ||||||| ||||||||||| ||||||||||| ||| Sbjct 112986 CCACCACGTAACCGAAGGACCAAATGTAAAGTCGACTCCTTCTGAATGTTGTAGTCGGAG 112927 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || || |||| || | |||||| || |||||| Sbjct 112926 AGTGTGCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGAGGG 112867 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| ||| || |||| | ||| | || || | | || | Sbjct 112866 ATACCTTCCTTGTC-CTGAATTTTAGCTTTGACGTTCTCGATTGTGTCTGATGCTTCCAC 112808 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| |||||||| ||||| || |||||||||||||| Sbjct 112807 TTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 112760 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || | |||||||| | || || ||||||||||| |||||||| Sbjct 113670 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGAT 113611 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | ||||| || || |||| || | |||||| ||||||||| Sbjct 113610 AAGGTACGTCCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGG 113551 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| ||||| | | | ||| | ||||| | | |||| Sbjct 113550 ATGCCTTCTTTATC-CTGAATTTTTGCTTTAACATTCTCTATCGTATCTGATGCTTCGAC 113492 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||||| ||||| || || ||||||||||| Sbjct 113491 TTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113444 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || | |||||||| | || || ||||||||||| ||||||||| Sbjct 112758 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGAG 112699 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| | || || | ||| || || ||||| Sbjct 112698 AGCGTGCGTCCGTCCTCCAGCTGCTTGCCAGCGAAAATCAATCTCTGTTGATCAGGAGGA 112639 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| |||||| ||| | | ||| | ||||| | | ||| | Sbjct 112638 ATTCCCTCTTTGTCTTGGATTTTGGCCTTAACATTCTCAATCGTATCAGAAGCCTCTACT 112579 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || | ||||| || ||||||||||| Sbjct 112578 TCCAAAGTAATAGTCTTTCCTGTCAAGGTTTTGACAAAAATCTGCAT 112532 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || | |||||||| | || || ||||||||||| |||||||| | Sbjct 113442 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGAC 113383 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || || || | || |||| || | |||||| ||||||| | Sbjct 113382 AAAGTGCGACCGTCTTCGAGTTGTTTTACAGCAAAGATCAATCTCTGCTGATCCGGAGTG 113323 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| | ||| ||| ||||| | | | ||| | ||||| | | ||||| Sbjct 113322 ATGCCTTCTTTAAC-CTGAATTTTTGCTTTAACATTCTCTATCGTATCAGATGCTTCGAT 113264 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||||| ||||| || || ||||||||||| Sbjct 113263 TTCCAATGTGATTGTTTTACCGGTGAGAGTCTTGACAAAAATCTGCAT 113216 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || | |||||||| | || || ||||||||||| |||||||| | Sbjct 113214 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGAC 113155 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || || || || || | ||||| | ||| || |||||||| Sbjct 113154 AAAGTGCGGCCGTCTTCGAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGATCCGGAGGA 113095 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| ||| |||| | | | ||| | ||||| | | |||| Sbjct 113094 ATGCCTTCTTTATC-TTGAATTTTGGCTTTAACATTCTCTATCGTATCTGATGCTTCGAC 113036 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||||| ||||| || || ||||||||||| Sbjct 113035 TTCCAATGTGATTGTTTTACCGGTAAGAGTCTTGACAAAAATCTGCAT 112988 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || ||||| |||||||||||||||||| Sbjct 112530 CCACCACGTAGACGAAGAACCAAATGCAAAGTGGACTCTTTTTGAATGTTGTAATCGGAA 112471 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||| || || || ||||||| | ||||| ||||| ||| Sbjct 112470 AGCGTGCGACCATCTTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGCTGATCCGGTGGG 112411 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||| |||| | ||| | ||||| | | ||| | Sbjct 112410 ATACCTTCCTTATC-CTGAATCTTTGCTTTGACATTCTCAATTGTATCTGATGCCTCCAC 112352 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | |||||| || || |||||||| Sbjct 112351 TTCCAACGTGATGGTCTTTCCTGTCAAAGTTTTGACAAAGATCTGCAT 112304 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||||| || || || || ||||| || ||||| || ||||| | Sbjct 114342 CGAAGTACAAGATGTAATGTGGATTCTTTCTGAATATTATAATCTGACAATGTGCGTCCG 114283 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| || |||||||| || | || || | |||||| || ||||| || || |||||| Sbjct 114282 TCCTCGAGTTGCTTGCCCGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCCTCTTTG 114223 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || |||||| ||||| | ||| | ||||| | | || | || | || | Sbjct 114222 TCTTGAATTTTCGCCTTGACATTCTCGATTGTATCTGAAGCTTCTACCTCCAAAGTGATA 114163 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || || | |||||| |||||||||||||| Sbjct 114162 GTTTTGCCTGTCAAAGTTTTGACGAAAATCTGCAT 114128 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || | |||||||| | || || ||||||||||| |||||||| Sbjct 113898 CCTCCGCGAAGTCGTAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCTGAT 113839 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | ||||| || || |||| || | |||||| |||| |||| Sbjct 113838 AAGGTACGTCCGTCTTCGGGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCCGTAGGG 113779 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 | |||||||| || ||| ||| || | | | | ||| | ||| | | | |||| Sbjct 113778 AAGCCTTCTTTATC-CTGAATTTTTGCCCTAACATTCTCTATTGTACCTGATGCTTCGAC 113720 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||| | |||||||| || ||||||||||| Sbjct 113719 TTCCAATGTGATTGTTTTACCGCTGAGAGTTTTGACAAAAATCTGCAT 113672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| | || || ||||| | || || |||||||| || || ||||| | Sbjct 112302 CCGCCACGCAATCTGAGGACCAAATGAAGAGTGGATTCCTTTTGGATATTATAATCAGAC 112243 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || || || || || | || |||||||||||||| || || Sbjct 112242 AAGGTACGTCCGTCTTCAAGTTGTTTTCCAGCAAAAATCAAACGCTGCTGGTCAGGTGGA 112183 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| ||| | | || ||| | | ||| | || || | || || | Sbjct 112182 ATACCCTCTTTGTC-CTGAATCTTTGCCTTTACGTTCTCGATGGTGTCAGAGGCTTCAAC 112124 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||| || |||| || || || |||||||||||| Sbjct 112123 TTCGAGAGTTATGGTTTTTCCAGTTAACGTCTTCACAAAAATCTGCATG 112075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | || || || || |||||||||||||| | || || || Sbjct 114111 AGGACTAAATGCAAAGTAGATTCTTTCTGAATGTTGTAATCAGAGAGTGTACGACCATCT 114052 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || ||||| || || || |||| || | |||||| ||||||||||| ||||| ||||| Sbjct 114051 TCAAGCTGTTTTCCAGCAAAGATCAATCTCTGCTGATCCGGAGGGATGCCTTCCTTGTC- 113993 Query 131143 GTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| ||| ||| |||| | || | || || | | || | || | || | || Sbjct 113992 CTGAATTTTTGCTTTGACATTTTCTATCGTGTCTGATGCTTCAACTTCTAATGTGATAGT 113933 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| || ||||| || || ||||| ||||| Sbjct 113932 TTTACCAGTGAGAGTCTTGACAAAAATTTGCAT 113900 >seq7770 Length=449423 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | |||| ||||| || | || || ||||||||||| || || || Sbjct 86877 GCCTCCACGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAGTCAGA 86936 Query 131067 CATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || | || | || |||||||| || || || | || | ||| ||||| || |||| Sbjct 86937 AAGAGTTCTGCCA-TCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCGGGAG 86995 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCG 131184 | |||||||| ||||| |||||| ||||| | | ||| | ||||| | | ||| Sbjct 86996 GAATTCCTTCCTTGTCTTGGATTTT-TGCTTTTACATTCTCTATGGTATCTGAAGCTTCG 87054 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | |||| |||||| || || |||||||| || ||||||||||| Sbjct 87055 ACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAAATCTGCAT 87104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471949131373440