Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camponotus_20floridanus_20[refseq_20GCF_5F000147175.1_202010-09-17] 10,791 sequences; 232,685,334 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4527 143 3e-29 seq8255 109 7e-19 seq9256 100 4e-16 >seq4527 Length=1270594 Score = 143 bits (158), Expect = 3e-29 Identities = 202/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || |||||||| || | |||| | || ||||||| || || ||||| || ||||| Sbjct 575343 CTGGACATTTGCTGGTTATTAGTACAGGCGTTAAATAGCGTTGGTGAAGCATGTGTAAAA 575402 Query 63506 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 || ||||||| || || |||||| || || |||||| ||| || || | |||||| Sbjct 575403 TATCTTTCAGACAAATA-ATTGTATGTTTCTATAGCTTTGTCAATGTCTGTCTCATGAAT 575461 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || || || | ||| ||||| || ||||||||||| || |||||| || ||||| Sbjct 575462 ACCGACAGCTACTCTCATCAACATATGTTGAGGTCTTTCTACTATCTTGCCATTGATTTT 575521 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 |||||| ||| | | || | || |||||||||| ||| || || ||||||||| || Sbjct 575522 CAACAAATAGCTTCTCTCAAGTGTCTTAAAACCAATATAATTATAACTAAAGTCTCGATC 575581 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63725 ||||| || | || | ||||| ||| || || |||| Sbjct 575582 ATAAATTATGGCAGAATCTAGTTTTTCCGCATTGTTTTTAA 575622 Score = 109 bits (120), Expect = 7e-19 Identities = 219/319 (69%), Gaps = 12/319 (4%) Strand=Plus/Plus Query 62592 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62651 |||| |||||||||||| | | |||||| ||| | |||| ||| |||||| |||| | Sbjct 574218 TACCAATAGGTCTATGTTTTTGATTAGATGTTTTGGTTTCTACAATGGGATAAAAATTGA 574277 Query 62652 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 ||| |||| ||||| | ||| | |||||| | |||| | | || ||||| Sbjct 574278 CATCGATAACTTTATCCAAATTACGTGTGACAACT--TTTG-CAATTGTTTTAAGTTTAT 574334 Query 62709 GAAAATCAAA----TCGCCCATC-TATTA-CAAACATGTTCAATGCAACAGATGCCAGAT 62762 |||||| || | | || ||||| ||||||| || | ||||| ||||||||||| Sbjct 574335 CAAAATCGAAAGTTTTGTTATTCGTATTAACAAACATATTGACTGCAATAGATGCCAGAT 574394 Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62822 |||| || || || || || | | | ||||| || | |||||||| | || || | Sbjct 574395 TACATACAGCAACTTCTCCAGGACCAGAGTATTGAATAACTTCAGTGCACAAGTTGCTGC 574454 Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 | ||||| || || | | || |||||| |||| || || ||| |||||||| | Sbjct 574455 ATTTGATTGTACCAATGTGCTGATGATTAGACTTTCGATTGCAATGATCTTTATAAAGCA 574514 Query 62883 TGAATGGAGTACCAGTTTC 62901 | | ||||| ||||| || Sbjct 574515 TATAAGGAGTTCCAGTCTC 574533 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Plus Query 62128 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62187 ||||| || || || | |||||| ||| | ||||| ||| | | ||| ||||| Sbjct 573573 ATTCTGCATGTCTTCGTCCCATAAACCTCTAGCAGTTAAGTCTCGCAATAAATGAGGATT 573632 Query 62188 AACTACTTGA--AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 || | ||| |||||||| |||||||| | | || |||||||| || |||||| Sbjct 573633 GACGA--TGACGAATTCTCCCGACAATACACGTCTTACATAGATATTACTCGTGTACGGT 573690 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | || || |||||||| || ||||| || || || || || ||||||||||| | | Sbjct 573691 TCGATGGATTCGTTATTTCCTAAGATTTGTGCCGTCGACGCCGTTGGCATAGGTGCAATC 573750 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62365 || | |||||| | |||| | | |||||| ||||| | ||||||| ||| Sbjct 573751 AAAAGCGAATTTCTTACTCCGTGTTTCGCGATTTTCTCTTTCAATTTATCCCAATCCCAT 573810 Query 62366 AGATCCGACGGT 62377 | || | |||| Sbjct 573811 AAATTTGTCGGT 573822 >seq8255 Length=582279 Score = 109 bits (120), Expect = 7e-19 Identities = 140/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 32927 AACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 32984 || |||||| ||||| | || || ||||||||| ||||||||||| || ||||| ||| Sbjct 398062 AATATATGTTTCAATAAGCAAGGA--ATACATTTCAGAATGAATGTTCTCTATGGCAATT 398005 Query 32985 TGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCT 33044 || ||||| ||||| || | || || | ||| | ||||||| || |||| || Sbjct 398004 TGGAATCCATAGAAACAACGTGCTTCAGCAATTTTTACTTCTTGACTGAATCTCTCAATC 397945 Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 | ||| ||||| || ||||| ||| || ||||| || ||||| ||||| ||||| Sbjct 397944 AGATTCTCATTAACGATTCCATCAGAAGCAGCAAAGAATGCCAAGACATGAGAGATAAAG 397885 Query 33105 TATTTTTCGTC 33115 ||| ||||||| Sbjct 397884 TATCTTTCGTC 397874 >seq9256 Length=299688 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 |||| |||| ||| ||||| ||||||||| || ||||| ||||| ||||| | || Sbjct 296556 TATGAACCTTTCTTGATAGCTATTTCACAACTAGCTTCTAAAGCACCATAATAGAGAGTC 296615 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 || || || | |||| || | | ||||| |||| ||||||||||| | | | Sbjct 296616 TCAAAAATTTGAATATTGAGTTTGCGAGCTTCTTGGCTTTCAAATGGATATCTCATTAAG 296675 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 ||||| || |||||||||||||| ||||||||||| Sbjct 296676 ATAAATGCATCTGCTAATCCTTGTACACCAATACC 296710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633546530963600